Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 0.0e+00 1400.6 701 100.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 0.0e+00 1159.8 711 80.6
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 0.0e+00 1124.4 707 77.8
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 0.0e+00 1114.8 708 77.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 0.0e+00 1094.0 712 77.5
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 0.0e+00 1094.0 714 76.2
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 3.2e-306 1054.7 699 75.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 4.7e-302 1040.8 705 73.9
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-287 992.6 698 70.8
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.0e-284 982.2 659 75.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.6e-278 962.6 698 70.1
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 9.1e-229 797.3 689 58.1
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 5.9e-228 794.7 707 57.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.0e-227 793.9 708 55.8
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.6e-225 786.6 707 55.7
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 4.7e-225 785.0 701 58.3
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.4e-224 783.5 694 55.8
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.8e-224 783.1 689 57.8
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.3e-224 782.7 702 56.3
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 2.0e-223 779.6 697 57.2
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.6e-223 779.2 689 57.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 3.1e-221 772.3 695 55.4
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 7.0e-221 771.2 691 56.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 5.9e-220 768.1 692 55.5
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 7.8e-220 767.7 698 54.0
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.0e-219 767.3 699 55.2
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.9e-219 765.8 696 55.3
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 6.6e-219 764.6 677 57.0
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.5e-218 763.5 701 56.3
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 9.5e-218 760.8 694 55.6
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 6.8e-216 754.6 690 56.2
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.4e-215 752.3 706 56.1
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 8.3e-214 747.7 712 53.2
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.1e-213 745.3 692 54.3
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.6e-212 743.4 696 53.7
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.3e-211 739.6 700 54.4
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.9e-210 736.5 697 55.4
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 7.3e-210 734.6 700 53.9
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 9.5e-210 734.2 635 56.5
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 4.7e-209 731.9 704 52.7
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.8e-208 729.9 700 54.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 6.8e-208 728.0 693 54.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 6.8e-208 728.0 707 53.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.2e-207 727.2 705 51.3
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.4e-207 725.7 739 51.4
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.9e-206 721.8 694 51.4
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 6.4e-206 721.5 706 51.1
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 3.2e-205 719.2 695 54.0
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 2.1e-204 716.5 697 50.9
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 7.8e-204 714.5 693 52.7
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.7e-203 713.4 701 52.6
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.9e-203 712.2 700 50.7
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 5.1e-203 711.8 722 51.0
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 8.6e-203 711.1 701 50.6
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 3.3e-202 709.1 654 59.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 5.6e-202 708.4 706 51.0
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.1e-201 706.4 704 49.4
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-200 703.7 694 53.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.8e-200 703.4 702 49.4
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 7.5e-199 698.0 698 50.0
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.5e-199 698.0 698 53.3
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 4.9e-198 695.3 698 48.9
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.9e-197 693.3 752 47.3
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 5.4e-197 691.8 735 50.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 8.6e-195 684.5 728 48.9
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.1e-193 679.9 715 50.3
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 3.6e-193 679.1 681 51.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 5.2e-192 675.2 855 45.0
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 2.2e-190 669.8 699 50.8
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 6.4e-190 668.3 648 50.2
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.4e-189 666.4 689 49.6
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 7.8e-188 661.4 693 50.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.3e-186 654.8 717 48.4
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 4.0e-184 649.0 699 49.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.2e-183 647.5 716 48.7
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.4e-183 645.6 695 50.1
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.2e-181 639.4 729 47.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 8.7e-179 631.3 710 47.5
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 5.1e-171 605.5 747 44.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.1e-168 597.8 703 45.2
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.5e-164 582.8 696 44.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.3e-161 574.3 648 48.0
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.4e-160 570.9 599 48.7
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.8e-160 570.5 705 45.1
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.2e-157 559.3 739 42.9
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.7e-140 503.4 562 48.6
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 4.8e-137 492.7 589 45.8
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 5.0e-134 482.6 451 54.1
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.2e-132 478.0 376 60.1
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.9e-131 473.0 696 41.4
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.5e-127 459.9 475 51.4
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 1.0e-126 458.4 457 51.4
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.0e-126 458.4 436 53.9
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.9e-125 454.1 691 37.6
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 2.7e-119 433.7 655 38.6
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 3.2e-104 383.6 565 37.3
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.0e-102 378.6 493 46.0
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 6.0e-95 352.8 264 62.1
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.3e-93 347.1 262 67.9
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.1e-91 342.0 537 35.6
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.4e-90 336.7 231 70.6
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-75 288.9 353 41.4
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 2.4e-75 287.7 319 47.3
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 9.6e-61 239.2 227 50.2
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 8.1e-60 236.1 262 44.3
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.7e-55 221.1 271 45.4
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 2.7e-55 221.1 278 43.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 3.7e-52 210.7 182 56.0
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-49 201.4 334 35.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 8.4e-49 199.5 294 40.5
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.6e-45 186.0 212 48.6
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.2e-40 169.9 516 27.9
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 9.7e-37 159.5 159 47.2
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.8e-36 157.9 160 50.6
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.9e-35 153.3 303 32.7
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.0e-35 152.9 324 32.7
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-33 149.4 185 43.2
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.3e-33 149.1 482 27.8
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.1e-31 140.2 288 31.9
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.8e-30 136.3 405 30.1
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 6.3e-28 130.2 161 39.8
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-27 128.3 257 35.0
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-27 127.9 327 32.4
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 7.7e-26 123.2 88 62.5
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-24 119.4 136 56.6
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.9e-24 118.6 171 39.8
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-24 118.2 171 42.7
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-23 115.5 195 32.8
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 2.7e-23 114.8 312 27.6
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.7e-21 106.3 149 40.9
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-19 102.8 106 50.9
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.1e-19 101.3 152 39.5
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-19 100.9 282 29.1
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 9.1e-19 99.8 399 26.1
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 9.1e-19 99.8 132 43.9
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-18 98.2 214 34.1
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.1e-16 92.8 95 50.5
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 5.5e-16 90.5 76 55.3
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-15 86.7 175 36.0
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.6e-13 81.6 85 49.4
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 4.4e-13 80.9 132 41.7
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-12 79.3 89 48.3
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.3e-12 79.3 84 50.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.7e-12 79.0 107 43.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.2e-12 78.6 85 48.2
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.3e-12 77.0 80 47.5
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.2e-12 76.6 85 48.2
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.4e-11 75.9 62 54.8
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 3.1e-11 74.7 69 49.3
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 2.9e-09 68.2 98 43.9
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.2e-08 63.5 83 42.2
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-07 62.0 91 35.2
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.3e-06 58.5 47 57.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 3.0e-06 58.2 44 52.3


User provided reference genes

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