Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.7e-88 329.3 168 100.0
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.5e-73 279.6 176 85.2
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.5e-71 272.3 176 84.7
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 5.5e-71 271.2 176 83.5
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.7e-70 268.9 177 81.4
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 6.0e-70 267.7 170 81.2
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 7.9e-70 267.3 171 81.3
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 7.9e-70 267.3 173 81.5
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.3e-69 266.5 168 79.8
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.8e-69 266.2 173 80.3
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.8e-69 266.2 173 80.9
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.3e-69 265.8 173 81.5
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.0e-69 265.4 169 80.5
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 5.1e-69 264.6 173 80.9
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 8.7e-69 263.8 173 79.8
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 2.5e-68 262.3 176 80.1
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 5.7e-68 261.2 176 80.1
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 5.7e-68 261.2 173 79.8
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 7.4e-68 260.8 176 79.5
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 7.4e-68 260.8 174 81.0
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.1e-67 259.2 173 81.5
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.1e-66 256.9 173 78.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.8e-66 256.1 174 77.6
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.1e-66 255.4 173 77.5
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 9.0e-66 253.8 175 77.7
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 9.0e-66 253.8 175 78.3
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 9.0e-66 253.8 174 76.4
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.2e-65 253.4 175 77.7
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.5e-65 253.1 171 78.4
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.5e-65 253.1 172 79.1
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 4.5e-65 251.5 171 76.6
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.0e-64 250.4 170 75.3
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.7e-64 249.6 175 77.1
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.7e-64 249.6 168 75.6
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.7e-64 249.6 168 75.6
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.2e-64 249.2 175 77.7
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.2e-64 249.2 171 76.6
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.1e-63 246.9 182 74.7
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.1e-63 246.9 172 77.3
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 2.5e-63 245.7 175 77.1
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 4.2e-63 245.0 174 77.6
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 4.2e-63 245.0 172 76.7
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 5.5e-63 244.6 175 76.6
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 9.3e-63 243.8 174 74.7
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.2e-62 243.4 171 74.3
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 3.5e-62 241.9 171 73.7
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.0e-61 240.4 174 74.1
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.0e-61 240.4 171 76.0
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 1.3e-61 240.0 170 73.5
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.3e-61 239.2 172 76.2
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 2.3e-61 239.2 173 75.7
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 3.9e-61 238.4 171 73.1
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 5.1e-61 238.0 168 73.2
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 5.1e-61 238.0 172 70.9
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 6.7e-61 237.7 172 72.1
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 8.7e-61 237.3 171 73.1
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 8.7e-61 237.3 172 75.0
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.1e-60 236.9 172 71.5
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-60 236.9 176 73.3
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.1e-60 236.9 176 72.2
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.9e-60 236.1 171 74.3
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-60 236.1 171 72.5
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-60 236.1 171 72.5
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-60 236.1 171 72.5
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.9e-60 236.1 173 74.0
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.3e-60 235.3 171 74.3
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 3.3e-60 235.3 172 70.9
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 4.3e-60 235.0 171 74.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.4e-60 234.2 176 72.7
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 9.7e-60 233.8 171 71.3
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 9.7e-60 233.8 172 72.7
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.6e-59 233.0 175 74.3
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.6e-59 233.0 175 74.3
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 2.2e-59 232.6 171 71.9
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.2e-59 232.6 170 70.6
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.8e-59 232.3 173 74.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.7e-59 231.9 171 73.7
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.7e-59 231.9 171 73.7
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 4.8e-59 231.5 168 72.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 6.3e-59 231.1 171 73.7
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 6.3e-59 231.1 169 72.8
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 8.2e-59 230.7 171 70.8
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.1e-58 230.3 180 71.7
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.1e-58 230.3 172 77.3
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.1e-58 230.3 177 74.0
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.1e-58 230.3 168 73.2
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.4e-58 229.9 172 69.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 1.8e-58 229.6 169 76.3
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-58 228.8 182 70.9
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 3.1e-58 228.8 171 74.3
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 4.1e-58 228.4 176 71.0
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 6.5e-56 221.1 172 69.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 6.5e-56 221.1 170 71.2
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 6.5e-56 221.1 170 71.2
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.4e-55 219.9 149 76.5
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 3.2e-55 218.8 167 71.3
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 9.4e-55 217.2 169 68.0
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 9.4e-55 217.2 168 70.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 9.4e-55 217.2 170 71.8
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.2e-54 216.9 173 69.9
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.6e-54 216.5 168 67.3
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.7e-54 215.7 178 66.3
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 3.6e-54 215.3 170 69.4
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.0e-53 213.8 171 68.4
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 3.0e-53 212.2 168 66.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 3.0e-53 212.2 174 67.2
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 5.1e-53 211.5 170 70.0
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 5.1e-53 211.5 168 66.7
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 6.7e-53 211.1 176 67.0
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 2.0e-52 209.5 175 66.3
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 4.3e-52 208.4 178 67.4
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 3.1e-50 202.2 144 77.1
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 3.4e-49 198.7 127 79.5
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 5.9e-49 198.0 171 67.3
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 5.9e-49 198.0 171 67.3
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 8.5e-48 194.1 168 62.5
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 2.6e-44 182.6 114 77.2
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 7.4e-44 181.0 145 70.3
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.3e-43 180.3 145 71.0
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.3e-43 180.3 130 73.8
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 4.8e-43 178.3 147 62.6
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 2.0e-41 172.9 141 68.1
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 2.2e-40 169.5 141 67.4
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 2.1e-38 162.9 141 66.7
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 6.7e-37 157.9 140 57.9
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 4.5e-33 145.2 82 79.3
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-32 144.1 120 62.5
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 5.0e-32 141.7 128 67.2
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 8.0e-30 134.4 169 53.3
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-29 134.0 74 86.5
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 3.0e-29 132.5 74 85.1
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 3.0e-29 132.5 72 87.5
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-28 130.6 74 83.8
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 8.5e-24 114.4 126 51.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 3.2e-23 112.5 161 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 6.1e-22 108.2 92 63.0
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.5e-20 103.6 102 61.8
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-20 103.2 74 68.9
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 3.4e-20 102.4 114 61.4
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.7e-19 100.1 107 60.7
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.7e-16 90.1 99 60.6
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 6.6e-16 88.2 79 59.5
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 2.5e-15 86.3 70 60.0
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 7.3e-15 84.7 106 46.2
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 2.9e-11 72.8 107 50.5
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 2.3e-08 63.2 30 90.0


User provided reference genes

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