Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 0.0e+00 1503.4 841 100.0
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 6.3e-301 1037.3 841 69.2
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 7.0e-300 1033.9 838 68.6
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 7.7e-299 1030.4 806 72.7
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 2.0e-291 1005.7 795 70.2
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 7.7e-291 1003.8 860 69.0
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 4.9e-277 958.0 870 63.9
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 6.6e-274 947.6 813 66.1
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 4.3e-273 944.9 800 67.0
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 9.5e-273 943.7 847 63.3
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.0e-250 869.0 803 63.0
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 9.9e-230 800.8 771 60.8
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.0e-205 721.1 843 53.7
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 3.9e-202 709.1 907 48.8
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.5e-201 706.4 781 54.5
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.3e-200 704.1 781 54.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.6e-198 696.4 806 54.1
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 5.9e-198 695.3 794 55.0
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.3e-197 694.1 822 54.0
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 8.5e-197 691.4 822 53.9
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.9e-196 690.3 820 53.8
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.2e-196 689.5 803 53.3
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.0e-193 680.2 833 50.5
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.0e-190 670.2 860 51.5
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 5.9e-190 668.7 823 51.5
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.9e-189 666.4 794 53.0
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 9.4e-188 661.4 791 52.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 4.7e-187 659.1 805 51.3
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 6.1e-187 658.7 777 52.6
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 8.0e-187 658.3 810 51.4
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.8e-186 657.1 801 50.9
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 3.7e-184 649.4 794 51.5
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.4e-183 647.5 847 51.1
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 8.5e-181 638.3 805 50.2
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.1e-180 637.9 818 52.1
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.5e-180 636.7 820 50.9
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 6.1e-179 632.1 791 50.9
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 6.3e-176 622.1 813 49.6
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.4e-175 620.2 819 49.9
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.0e-174 617.1 798 47.7
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 5.9e-174 615.5 791 50.1
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.7e-173 614.0 805 49.8
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 6.5e-173 612.1 797 50.3
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.1e-172 611.3 821 49.5
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 1.5e-172 610.9 487 69.2
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.9e-172 610.5 804 48.5
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 5.5e-172 609.0 794 51.1
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 2.6e-169 600.1 808 49.4
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 5.7e-169 599.0 849 47.6
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.3e-168 597.8 857 47.6
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 7.0e-167 592.0 799 49.2
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 2.7e-166 590.1 818 50.1
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.3e-165 587.8 831 44.8
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.7e-165 587.4 808 48.1
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.9e-165 586.6 800 48.2
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 8.6e-165 585.1 793 48.3
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.1e-164 584.7 808 47.9
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 4.2e-164 582.8 834 47.6
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 9.5e-164 581.6 811 47.7
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.2e-163 581.3 823 48.1
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.1e-163 580.5 826 46.7
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 3.6e-163 579.7 795 48.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 6.1e-163 578.9 809 45.7
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.8e-162 577.4 817 47.4
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.8e-162 577.4 819 48.0
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 4.0e-162 576.2 791 45.3
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 8.9e-162 575.1 823 48.1
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.4e-161 573.2 810 47.0
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.2e-160 570.5 810 46.9
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 5.4e-159 565.8 839 45.1
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 3.5e-158 563.1 841 46.5
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.0e-157 561.6 824 47.3
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.0e-157 561.6 818 46.3
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 6.6e-157 558.9 756 49.2
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 8.6e-157 558.5 822 44.9
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.1e-156 558.1 793 47.0
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.3e-156 556.6 809 46.2
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 2.8e-155 553.5 822 46.5
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 8.0e-155 552.0 681 51.4
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.0e-153 547.4 816 44.0
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.8e-153 545.8 695 51.7
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.9e-152 543.5 692 49.3
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.1e-151 541.6 780 46.0
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 3.2e-151 540.0 813 46.4
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.2e-147 528.1 817 44.8
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.6e-147 527.7 502 57.6
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 2.1e-147 527.3 764 46.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 6.2e-147 525.8 815 44.9
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.4e-146 524.6 798 45.4
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 2.6e-145 520.4 822 44.8
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.7e-144 517.7 817 45.9
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.1e-143 515.0 798 44.7
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 1.1e-143 515.0 827 43.4
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 3.2e-143 513.5 798 44.7
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.2e-142 511.5 804 44.8
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.6e-142 509.6 804 44.8
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 8.3e-136 488.8 818 44.5
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 3.0e-133 480.3 772 44.3
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 4.3e-132 476.5 771 44.2
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.9e-124 451.1 737 43.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 3.3e-124 450.3 813 42.4
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.9e-120 437.2 847 41.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 1.5e-116 424.9 846 41.4
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 1.6e-110 404.8 887 39.6
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 5.1e-109 399.8 870 38.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.4e-106 391.0 812 41.5
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.7e-99 367.1 770 39.6
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 2.0e-97 361.3 496 47.6
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.9e-95 354.8 496 47.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 7.4e-92 342.8 851 35.7
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.3e-83 315.5 830 35.1
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 6.1e-78 296.6 578 40.0
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.6e-70 271.9 235 63.4
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 8.5e-64 249.6 194 69.6
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.5e-63 248.8 559 34.2
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 3.1e-58 231.1 471 37.8
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 7.7e-57 226.5 841 27.0
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 1.8e-50 205.3 248 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 7.0e-50 203.4 790 29.7
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 7.7e-49 199.9 171 64.9
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.2e-41 176.0 375 34.4
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.6e-41 175.6 710 30.4
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 1.5e-39 169.1 460 34.1
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 7.0e-34 150.2 117 65.0
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 8.0e-30 136.7 170 42.9
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.3e-24 119.4 241 37.3
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.2e-22 112.8 161 42.2
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.6e-12 78.6 72 55.6
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.9e-11 75.1 117 47.0
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 5.4e-10 70.9 72 51.4
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 2.7e-09 68.6 148 33.8
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 1.3e-08 66.2 111 40.5
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 8.7e-08 63.5 82 41.5
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.6e-06 59.3 47 59.6


User provided reference genes

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