Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024049 Lotus japonicus HOM05D008220 ORTHO05D010358 0.0e+00 1409.4 705 100.0
Lj2g0027421 Lotus japonicus HOM05D008220 ORTHO05D010358 0.0e+00 1081.6 571 95.4
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-268 929.1 699 70.5
Lj5g0003699 Lotus japonicus HOM05D008220 ORTHO05D010358 5.5e-189 665.2 647 58.6
LjContig00141g0005868 Lotus japonicus HOM05D008220 ORTHO05D010358 3.1e-160 569.7 586 56.7
Lj5g0005201 Lotus japonicus HOM05D008220 ORTHO05D010358 3.6e-92 343.6 643 35.9
Lj6g0019563 Lotus japonicus HOM05D008220 ORTHO05D010358 5.8e-90 336.3 310 58.1
Lj1g0024783 Lotus japonicus HOM05D008220 ORTHO05D010358 3.5e-79 300.4 490 40.4
Lj5g0008704 Lotus japonicus HOM05D008220 ORTHO05D010358 4.5e-74 283.5 373 46.9
Lj5g0002610 Lotus japonicus HOM05D008220 ORTHO05D010358 6.9e-67 259.6 660 33.6
LjContig00136g0020509 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-62 245.4 424 42.0
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 4.5e-50 203.8 292 38.4
LjContig00141g0011294 Lotus japonicus HOM05D008220 ORTHO05D010358 4.4e-45 187.2 675 26.4
LjContig00127g0011774 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-43 182.2 341 35.5
Lj3g0027860 Lotus japonicus HOM05D008220 ORTHO05D010358 3.1e-43 181.0 365 34.0
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 1.0e-41 176.0 278 37.8
Lj6g0001845 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-41 175.6 588 27.7
Lj1g0026317 Lotus japonicus HOM05D008220 ORTHO05D010358 4.2e-40 170.6 689 26.9
Lj4g0014288 Lotus japonicus HOM05D008220 ORTHO05D010358 3.0e-38 164.5 299 33.4
Lj3g0011116 Lotus japonicus HOM05D008220 ORTHO05D010358 7.4e-37 159.8 499 31.5
Lj6g0014297 Lotus japonicus HOM05D008220 ORTHO05D010358 4.1e-35 154.1 257 37.4
Lj1g0018935 Lotus japonicus HOM05D008220 ORTHO05D010358 4.5e-34 150.6 304 32.6
Lj3g0010325 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-33 148.7 358 32.1
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 2.2e-33 148.3 350 29.4
Lj6g0001371 Lotus japonicus HOM05D008220 ORTHO05D010358 5.0e-33 147.1 358 32.1
Lj3g0019996 Lotus japonicus HOM05D008220 ORTHO05D010358 6.1e-31 140.2 366 27.3
LjContig00583g0009142 Lotus japonicus HOM05D008220 ORTHO05D010358 1.2e-29 136.0 296 31.4
Lj2g0017871 Lotus japonicus HOM05D008220 ORTHO05D010358 8.2e-28 129.8 281 31.0
Lj1g0001129 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-27 129.0 548 25.2
Lj5g0015440 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-26 125.2 339 26.5
Lj1g0010052 Lotus japonicus HOM05D008220 ORTHO05D010358 5.0e-25 120.6 547 25.0
Lj6g0011493 Lotus japonicus HOM05D008220 ORTHO05D010358 4.2e-24 117.5 247 33.6
Lj6g0021460 Lotus japonicus HOM05D008220 ORTHO05D010358 7.2e-24 116.7 247 33.6
Lj6g0000075 Lotus japonicus HOM05D008220 ORTHO05D010358 3.0e-22 111.3 368 31.2
Lj2g0022307 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-21 108.6 202 28.7
Lj2g0019090 Lotus japonicus HOM05D008220 ORTHO05D010358 4.4e-21 107.5 316 27.5
Lj2g0009989 Lotus japonicus HOM05D008220 ORTHO05D010358 5.7e-21 107.1 216 32.4
Lj1g0017334 Lotus japonicus HOM05D008220 ORTHO05D010358 4.8e-20 104.0 311 24.4
Lj5g0012072 Lotus japonicus HOM05D008220 ORTHO05D010358 4.8e-20 104.0 276 29.7
Lj1g0012808 Lotus japonicus HOM05D008220 ORTHO05D010358 6.3e-20 103.6 191 35.6
Lj1g0010280 Lotus japonicus HOM05D008220 ORTHO05D010358 1.2e-18 99.4 311 24.4
Lj4g0014244 Lotus japonicus HOM05D008220 ORTHO05D010358 7.7e-18 96.7 229 27.9
Potri.017G044300 Populus trichocarpa HOM05D002777 ORTHO05D001516 1.0e-17 96.3 313 23.6
Lj2g0010122 Lotus japonicus HOM05D008220 ORTHO05D010358 1.5e-16 92.4 163 28.2
Lj3g0028205 Lotus japonicus HOM05D008220 ORTHO05D010358 3.3e-16 91.3 169 32.0
TPR.G19363 Trifolium pratense HOM05D002777 ORTHO05D001516 7.2e-16 90.1 334 24.3
Sc12g0005710 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.6e-15 87.8 303 23.8
Lj4g0023050 Lotus japonicus HOM05D008220 ORTHO05D010358 1.0e-14 86.3 183 31.7
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.0e-14 84.3 354 24.0
Lj1g0021549 Lotus japonicus HOM05D008220 ORTHO05D010358 4.0e-14 84.3 150 33.3
Lj1g0011765 Lotus japonicus HOM05D008220 ORTHO05D010358 5.2e-14 84.0 292 24.7
Lj1g0002722 Lotus japonicus HOM05D008220 ORTHO05D010358 8.9e-14 83.2 168 29.8
Lj3g0004063 Lotus japonicus HOM05D008220 ORTHO05D010358 1.5e-13 82.4 237 28.7
Sc16g0003440 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.5e-13 82.4 319 23.8
Phvul.001G161800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.0e-13 82.0 336 24.1
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.0e-13 82.0 350 23.7
Phvul.003G099400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.4e-13 81.3 310 22.6
LjContig00081g0006498 Lotus japonicus HOM05D030494 ORTHO05D010358 4.4e-13 80.9 268 28.4
Atru.chr3.2350 Acer truncatum HOM05D016018 ORTHO05D017146 7.5e-13 80.1 166 28.3
Glyma.06G268900 Glycine max HOM05D002777 ORTHO05D001516 7.5e-13 80.1 409 21.5
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 9.8e-13 79.7 294 23.5
Lj4g0013222 Lotus japonicus HOM05D002777 ORTHO05D001516 9.8e-13 79.7 343 24.5
Lj2g0023598 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-12 79.0 496 26.8
Lj5g0006780 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-12 79.0 247 29.1
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.8e-12 78.2 288 23.3
Phvul.011G176000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.4e-11 75.9 311 23.5
Psat3g118120 Pisum sativum HOM05D007807 ORTHO05D001516 1.4e-11 75.9 381 23.4
Phvul.008G120900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.1e-11 74.7 335 23.6
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.1e-11 74.7 292 23.6
Phvul.010G066000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 7.0e-11 73.6 303 22.4
Phvul.001G088300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 9.2e-11 73.2 290 24.5
Phvul.010G016100 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.0e-10 72.0 308 23.7
Glyma.02G165100 Glycine max HOM05D002777 ORTHO05D001516 2.7e-10 71.6 383 23.5
Phvul.009G011500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.7e-10 71.6 310 22.9
Psat4g004920 Pisum sativum HOM05D007807 ORTHO05D001516 2.7e-10 71.6 402 22.4
Phvul.L005801 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 4.5e-10 70.9 317 20.8
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-09 69.7 93 35.5
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 1.7e-09 68.9 269 25.7
Lj1g0014390 Lotus japonicus HOM05D002777 ORTHO05D001516 1.7e-09 68.9 336 23.2
Lj2g0013073 Lotus japonicus HOM05D008220 ORTHO05D010358 2.3e-09 68.6 282 24.8
Lj5g0026451 Lotus japonicus HOM05D008220 ORTHO05D010358 2.3e-09 68.6 361 21.6
Phvul.008G101400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.3e-09 68.6 309 22.3
Phvul.005G131700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.8e-09 67.8 312 21.5
Phvul.009G005600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.8e-09 67.8 282 20.9
Phvul.010G029500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.8e-09 67.8 261 23.4
Sc06g0004220 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.8e-09 67.8 290 22.4
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.6e-09 67.0 112 32.1
Lj1g0022989 Lotus japonicus HOM05D008220 ORTHO05D010358 6.6e-09 67.0 242 30.2
Lj2g0003501 Lotus japonicus HOM05D002777 ORTHO05D001516 8.6e-09 66.6 372 22.8
Lj4g0027037 Lotus japonicus HOM05D002777 ORTHO05D001516 8.6e-09 66.6 356 22.2
Phvul.006G023800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 8.6e-09 66.6 317 20.8
Lj5g0001897 Lotus japonicus HOM05D002777 ORTHO05D001516 1.5e-08 65.9 307 23.1
Phvul.004G009401 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.5e-08 65.9 315 21.9
Sc13g0005400 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.5e-08 65.9 152 27.6
Lalb_Chr23g0273581 Lupinus albus HOM05D002777 ORTHO05D001516 1.9e-08 65.5 218 24.8
Phvul.008G164400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.9e-08 65.5 261 22.2
Phvul.010G078700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.9e-08 65.5 322 22.4
Phvul.L001950 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.9e-08 65.5 266 21.8
Sc26g0001380 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.9e-08 65.5 267 20.2
LjContig00357g0023212 Lotus japonicus HOM05D002777 ORTHO05D001516 2.5e-08 65.1 351 20.2
Sc02g0004050 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.5e-08 65.1 97 34.0
Lj4g0004153 Lotus japonicus HOM05D008220 ORTHO05D010358 4.3e-08 64.3 172 28.5
Lj6g0007004 Lotus japonicus HOM05D019244 ORTHO05D010358 4.3e-08 64.3 113 36.3
Lj6g0026012 Lotus japonicus HOM05D008220 ORTHO05D010358 4.3e-08 64.3 217 26.7
Medtr2g060030 Medicago truncatula HOM05D008558 ORTHO05D011658 4.3e-08 64.3 353 23.2
Sc06g0004260 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.3e-08 64.3 89 34.8
Phvul.010G047300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.6e-08 63.9 298 21.5
Phvul.010G071200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 7.3e-08 63.5 318 20.1
Sc20g0002870 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.3e-08 63.5 101 34.7
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.3e-08 63.5 97 36.1
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 7.3e-08 63.5 288 20.8
Phvul.006G002800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 9.5e-08 63.2 311 21.9
Phvul.002G139600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.2e-07 62.8 290 21.7
Ah.07g196620 Amaranthus hybridus HOM05D008762 ORTHO05D031041 1.6e-07 62.4 82 37.8
Phvul.002G156300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.6e-07 62.4 270 21.9
Phvul.011G184000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.6e-07 62.4 324 21.0
Lj3g0022675 Lotus japonicus HOM05D002777 ORTHO05D001516 2.1e-07 62.0 194 23.2
Lj6g0001789 Lotus japonicus HOM05D019244 ORTHO05D010358 2.1e-07 62.0 109 31.2
Thecc.07G067600 Theobroma cacao HOM05D023671 ORTHO05D001516 2.1e-07 62.0 188 26.6
Phvul.002G198900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.8e-07 61.6 280 20.0
COL.COLO4_00259 Corchorus olitorius HOM05D008263 ORTHO05D009583 3.6e-07 61.2 368 18.2
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 4.7e-07 60.8 187 20.3
Manes.06G033475 Manihot esculenta HOM05D009258 ORTHO05D001516 4.7e-07 60.8 178 23.0
BcaC04g22159 Brassica carinata HOM05D000285 ORTHO05D000241 6.1e-07 60.5 92 40.2
A09p18240 Brassica napus HOM05D000285 ORTHO05D000241 6.1e-07 60.5 79 41.8
C09p22690 Brassica napus HOM05D000285 ORTHO05D000241 6.1e-07 60.5 92 40.2
MBI16_g42312_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 6.1e-07 60.5 284 21.5
Atru.chr2.3570 Acer truncatum HOM05D016018 ORTHO05D017146 8.0e-07 60.1 152 28.3
Ah.05g174560 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.0e-07 60.1 112 28.6
COL.COLO4_38463 Corchorus olitorius HOM05D008263 ORTHO05D009583 8.0e-07 60.1 302 23.5
Phvul.004G125000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 8.0e-07 60.1 174 22.4
Phvul.007G107000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 8.0e-07 60.1 268 21.3
Phvul.011G125000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 8.0e-07 60.1 320 20.6
Sc01g0000330 Simmondsia chinensis HOM05D009348 ORTHO05D010856 8.0e-07 60.1 81 37.0
Sc01g0006920 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.0e-07 60.1 97 35.1
Sc10g0006460 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.0e-07 60.1 107 30.8
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-06 59.7 92 34.8
Ah.07g201540 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-06 59.7 78 38.5
Phvul.002G142300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.0e-06 59.7 241 22.8
CARHR283940 Cardamine hirsuta HOM05D000285 ORTHO05D000241 1.8e-06 58.9 79 39.2
MBI18_g31932_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.8e-06 58.9 315 22.5
Phvul.002G137200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.8e-06 58.9 293 20.8
Sp2g05110 Schrenkiella parvula HOM05D000285 ORTHO05D000241 1.8e-06 58.9 79 40.5
Sc14g0007840 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.3e-06 58.5 107 33.6
BcaB04g20206 Brassica carinata HOM05D000285 ORTHO05D000241 3.1e-06 58.2 93 37.6
Glyma.13G027700 Glycine max HOM05D002777 ORTHO05D001516 3.1e-06 58.2 319 20.1
Glyma.20G003900 Glycine max HOM05D002777 ORTHO05D001516 3.1e-06 58.2 314 20.7
Hund02584 Selenicereus undatus HOM05D000142 ORTHO05D000124 3.1e-06 58.2 83 39.8
Ah.11g045590 Amaranthus hybridus HOM05D000851 ORTHO05D003960 4.0e-06 57.8 105 31.4
Psat1g199520 Pisum sativum HOM05D007807 ORTHO05D001516 4.0e-06 57.8 171 27.5
Sc19g0006270 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.0e-06 57.8 113 30.1
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.2e-06 57.4 303 21.8
BcaC09g49471 Brassica carinata HOM05D000285 ORTHO05D000241 5.2e-06 57.4 93 37.6
C01p36270 Brassica napus HOM05D000285 ORTHO05D000241 5.2e-06 57.4 93 37.6
BolC1t03585H Brassica oleracea HOM05D000285 ORTHO05D000241 5.2e-06 57.4 93 37.6
Lj4g0019865 Lotus japonicus HOM05D019244 ORTHO05D036501 5.2e-06 57.4 79 38.0
Hund09915 Selenicereus undatus HOM05D000142 ORTHO05D000124 5.2e-06 57.4 83 38.6
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 6.8e-06 57.0 228 24.6
Lj5g0005169 Lotus japonicus HOM05D002777 ORTHO05D001516 8.9e-06 56.6 82 35.4
Lj6g0028179 Lotus japonicus HOM05D002777 ORTHO05D001516 8.9e-06 56.6 229 24.9
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 8.9e-06 56.6 228 23.2


User provided reference genes

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