Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.2e-74 283.1 140 100.0
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.3e-45 185.3 156 67.3
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 7.3e-45 184.1 156 67.3
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 7.3e-45 184.1 156 67.3
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 7.3e-45 184.1 156 67.3
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 9.6e-45 183.7 156 66.7
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.1e-44 182.6 156 66.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 4.0e-43 178.3 148 68.9
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.5e-42 176.4 157 63.7
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.0e-42 176.0 156 62.8
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.6e-42 175.6 156 62.2
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.4e-42 175.3 156 63.5
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.4e-42 174.9 156 63.5
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.4e-42 174.9 141 67.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 63.5
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 63.5
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 63.5
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 61.5
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 63.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 62.2
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 62.2
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.8e-42 174.5 156 61.5
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 7.6e-42 174.1 156 61.5
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.9e-42 173.7 157 63.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.3e-41 173.3 144 66.7
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.3e-41 173.3 156 61.5
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.7e-41 172.9 156 61.5
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.7e-41 172.9 156 62.8
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.2e-41 172.6 156 60.9
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.2e-41 172.6 156 60.9
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.9e-41 171.4 156 60.9
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 4.9e-41 171.4 156 60.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.4e-41 171.0 156 61.5
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 6.4e-41 171.0 156 62.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 8.4e-41 170.6 140 65.7
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.1e-40 170.2 156 60.9
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.4e-40 169.9 156 60.9
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.9e-40 169.5 144 63.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.4e-40 169.1 156 60.3
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.2e-40 168.3 156 61.5
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.2e-40 168.3 144 63.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.4e-40 167.9 156 59.6
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 7.1e-40 167.5 140 66.4
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 7.1e-40 167.5 140 65.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 7.1e-40 167.5 156 59.6
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 9.3e-40 167.2 171 58.5
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 9.3e-40 167.2 158 60.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.2e-39 166.8 156 59.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.1e-39 166.0 169 58.0
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.7e-39 165.6 158 59.5
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 2.7e-39 165.6 158 59.5
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 3.5e-39 165.2 156 57.7
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 6.0e-39 164.5 156 57.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 7.8e-39 164.1 156 59.6
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.0e-38 163.7 156 59.0
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.0e-38 163.7 156 57.1
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.7e-38 162.9 156 58.3
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 2.3e-38 162.5 156 55.8
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.0e-38 162.2 156 58.3
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.6e-38 161.0 156 57.7
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 6.6e-38 161.0 156 58.3
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-37 160.2 192 51.0
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.5e-37 159.8 157 57.3
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.5e-37 159.1 156 57.1
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 2.5e-37 159.1 156 57.1
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.3e-37 158.7 179 53.1
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.3e-37 158.3 140 61.4
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 9.6e-37 157.1 156 59.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 9.6e-37 157.1 157 59.2
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.1e-36 156.0 156 56.4
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.6e-36 155.2 156 58.3
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.6e-36 155.2 153 56.2
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.4e-35 153.3 140 60.7
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.4e-35 153.3 140 59.3
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.4e-35 152.5 130 63.1
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.1e-35 152.1 156 53.8
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 4.0e-35 151.8 159 56.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.0e-35 151.8 168 51.8
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 4.0e-35 151.8 172 52.3
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.0e-34 149.4 174 54.6
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 2.0e-34 149.4 156 52.6
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.3e-33 146.7 156 51.3
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 6.4e-33 144.4 156 49.4
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 6.0e-31 137.9 140 52.9
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 7.9e-31 137.5 76 90.8
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 7.9e-31 137.5 106 67.9
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.0e-30 137.1 140 55.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.8e-30 136.3 140 57.1
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-30 136.0 76 88.2
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-30 136.0 76 88.2
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-30 136.0 76 88.2
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.1e-30 134.8 76 86.8
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.3e-28 130.2 76 81.6
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.3e-28 130.2 76 82.9
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.3e-28 130.2 76 82.9
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.6e-28 129.8 76 81.6
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 2.1e-28 129.4 76 82.9
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.1e-28 129.4 76 82.9
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 2.8e-28 129.0 76 81.6
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 4.8e-28 128.3 76 82.9
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 4.8e-28 128.3 76 82.9
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 8.1e-28 127.5 76 80.3
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 8.1e-28 127.5 88 73.9
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.1e-27 127.1 76 82.9
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.1e-27 127.1 76 82.9
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.1e-27 127.1 76 82.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.1e-27 125.6 76 80.3
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 4.0e-27 125.2 76 78.9
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.0e-27 125.2 76 78.9
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 5.3e-27 124.8 86 74.4
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.2e-26 123.6 105 61.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.2e-26 123.6 105 61.9
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.6e-26 122.5 76 76.3
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.6e-26 122.5 137 50.4
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 2.6e-26 122.5 76 76.3
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.6e-26 122.5 76 76.3
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.6e-26 120.9 76 76.3
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 9.9e-26 120.6 156 46.8
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.9e-25 119.0 76 73.7
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 3.8e-25 118.6 76 72.4
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 4.9e-25 118.2 76 73.7
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 4.9e-25 118.2 76 72.4
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 6.4e-25 117.9 76 71.1
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 6.4e-25 117.9 76 72.4
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 6.4e-25 117.9 76 71.1
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 8.4e-25 117.5 107 57.9
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.4e-24 116.7 79 69.6
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.2e-24 115.2 76 71.1
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 5.5e-24 114.8 76 71.1
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 2.1e-23 112.8 73 69.9
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.5e-21 105.9 130 46.9
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 2.1e-20 102.8 56 91.1
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 2.8e-20 102.4 57 87.7
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 9.0e-19 97.4 114 48.2
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 4.5e-18 95.1 75 56.0
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.1e-16 90.5 150 36.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 2.5e-16 89.4 50 84.0
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.2e-16 89.0 136 38.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.0e-15 84.7 144 37.5
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 3.0e-14 82.4 100 51.0
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.9e-14 82.0 49 75.5
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 8.7e-14 80.9 100 51.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 7.4e-13 77.8 45 77.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 8.5e-09 64.3 107 40.2
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.9e-08 63.2 62 58.1
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.9e-08 63.2 62 58.1
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-08 63.2 62 58.1
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-08 63.2 62 58.1
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 2.5e-08 62.8 116 39.7
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.2e-08 62.4 62 58.1
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 4.2e-08 62.0 62 56.5
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.2e-08 62.0 62 54.8
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.2e-08 62.0 62 56.5
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 5.5e-08 61.6 62 54.8
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 3.6e-07 58.9 62 54.8
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.6e-07 58.5 31 90.3
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.8e-06 56.6 29 86.2


User provided reference genes

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