Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 6.0e-167 590.9 321 100.0
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 4.0e-139 498.4 318 82.7
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 4.4e-138 495.0 333 81.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 2.9e-137 492.3 318 83.3
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 1.2e-135 486.9 319 82.1
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.4e-131 473.4 321 74.1
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 3.4e-130 468.8 327 76.5
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 5.6e-125 451.4 323 78.3
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 1.2e-122 443.7 324 75.0
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 7.9e-119 431.0 329 71.4
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.9e-117 426.4 332 75.6
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 1.4e-115 420.2 325 71.7
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 4.5e-114 415.2 322 70.2
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.7e-113 413.3 318 69.8
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.6e-111 406.8 318 70.4
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.0e-110 404.1 315 64.1
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.1e-109 400.6 317 64.7
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.1e-109 400.6 317 64.7
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 9.7e-109 397.5 318 64.5
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 6.9e-107 391.3 324 67.9
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.2e-106 390.6 296 70.9
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 2.6e-106 389.4 332 68.1
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 4.5e-106 388.7 320 67.2
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.1e-104 384.0 335 63.9
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 1.9e-104 383.3 314 69.7
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.2e-103 380.6 332 65.4
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 7.9e-103 377.9 357 60.2
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.4e-102 377.1 316 69.6
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 3.0e-102 375.9 316 66.5
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.1e-102 375.2 322 58.4
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.5e-101 373.6 323 65.6
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 2.5e-101 372.9 326 63.8
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.3e-100 370.5 324 63.9
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.8e-100 368.6 335 64.8
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 8.2e-100 367.9 316 65.5
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 8.2e-100 367.9 356 62.6
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.1e-99 367.5 357 62.7
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.1e-99 367.5 322 64.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.1e-99 365.9 346 64.2
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 4.1e-99 365.5 347 62.8
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 6.9e-99 364.8 320 60.9
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 9.1e-99 364.4 353 62.3
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 2.6e-98 362.8 318 67.0
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 3.4e-98 362.5 321 59.8
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 4.5e-98 362.1 314 63.7
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 4.5e-98 362.1 315 61.0
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.0e-97 360.9 350 62.6
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.3e-97 360.5 380 54.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.4e-96 357.1 316 53.5
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 7.2e-96 354.8 318 57.2
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.6e-95 353.6 314 60.8
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.6e-95 353.6 317 53.0
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.8e-94 350.1 315 55.9
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.4e-93 344.7 317 62.1
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 7.4e-93 344.7 318 56.9
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.7e-92 343.6 312 59.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 4.8e-92 342.0 317 65.0
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 8.2e-92 341.3 341 58.4
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 9.1e-91 337.8 331 57.1
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 2.5e-88 329.7 319 60.5
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 4.2e-88 328.9 266 65.4
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 2.7e-87 326.2 322 55.0
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.0e-86 324.3 337 56.1
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.8e-86 323.6 318 58.2
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 1.8e-86 323.6 318 59.4
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 5.2e-86 322.0 315 56.2
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.7e-84 317.0 316 57.6
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.8e-83 313.5 356 56.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 7.7e-82 308.1 323 53.6
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.9e-81 306.2 314 52.9
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.5e-81 305.1 350 53.1
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 2.7e-79 299.7 326 54.0
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.7e-79 298.9 339 47.2
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.4e-78 297.4 340 47.6
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-78 297.0 316 49.1
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 2.3e-78 296.6 316 50.3
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.0e-78 295.8 320 48.8
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 2.0e-77 293.5 336 53.0
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 3.4e-77 292.7 336 53.0
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 4.4e-77 292.4 313 56.2
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.5e-77 291.6 316 48.1
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 9.7e-77 291.2 336 53.0
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 6.3e-76 288.5 328 57.3
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 5.3e-75 285.4 339 52.5
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 7.0e-75 285.0 347 52.2
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 2.0e-74 283.5 328 52.1
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.5e-74 282.7 307 51.5
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 3.5e-74 282.7 360 47.2
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 5.9e-74 282.0 339 52.2
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.3e-73 280.8 337 51.9
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.3e-73 280.8 337 51.9
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.3e-73 280.8 337 51.9
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.7e-73 280.4 316 56.3
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.7e-73 280.4 337 52.2
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 2.9e-73 279.6 337 51.9
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 6.5e-73 278.5 371 43.9
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.5e-72 276.6 309 51.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 4.2e-72 275.8 346 46.2
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 4.2e-72 275.8 381 48.6
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.2e-72 275.0 315 47.9
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.1e-71 273.5 368 48.6
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 6.3e-68 261.9 317 47.0
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.0e-65 254.6 262 60.3
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.3e-65 253.4 306 51.3
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 2.3e-65 253.4 322 46.9
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 8.6e-57 224.9 310 41.9
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 9.5e-56 221.5 326 41.1
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 6.8e-54 215.3 319 39.8
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 8.9e-54 214.9 335 44.5
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.9e-49 199.5 318 37.4
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 8.6e-49 198.4 156 62.2
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.5e-48 197.6 127 71.7
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.6e-47 194.1 344 42.7
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 3.6e-47 193.0 386 34.7
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 8.0e-47 191.8 332 43.1
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-44 184.1 230 45.7
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 4.6e-42 176.0 129 69.0
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.1e-40 171.4 155 59.4
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 3.7e-36 156.4 162 48.1
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 3.6e-31 139.8 312 32.1
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 2.0e-29 134.0 296 31.1
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 5.8e-29 132.5 309 29.4
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.4e-27 127.9 303 30.7
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 4.8e-23 112.8 140 41.4
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 9.0e-22 108.6 325 26.2
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-19 100.9 108 50.0
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.9e-19 100.9 217 42.4
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.3e-15 88.2 142 38.0
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 4.2e-11 73.2 60 55.0
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 1.1e-08 65.1 93 38.7
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 2.1e-07 60.8 127 30.7
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.4e-06 58.2 107 34.6


User provided reference genes

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