Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 1.1e-96 356.7 184 100.0
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 2.9e-65 252.3 164 80.5
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 9.3e-64 247.3 181 71.8
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 1.9e-61 239.6 179 70.4
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 4.3e-61 238.4 182 70.3
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 1.3e-60 236.9 178 69.7
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 2.8e-60 235.7 181 68.0
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.8e-60 235.7 190 65.8
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 3.6e-60 235.3 181 67.4
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 6.2e-60 234.6 190 66.3
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 3.8e-57 225.3 179 65.4
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 4.2e-56 221.9 190 63.2
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.0e-54 217.2 179 63.7
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 3.0e-54 215.7 185 63.2
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.1e-53 213.8 190 61.1
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 3.6e-52 208.8 180 62.8
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 3.6e-52 208.8 193 59.6
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 8.1e-52 207.6 190 58.9
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 8.4e-49 197.6 183 62.8
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 1.9e-48 196.4 176 61.9
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 4.6e-47 191.8 192 54.7
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 1.0e-46 190.7 178 58.4
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 1.8e-46 189.9 185 57.3
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 2.3e-46 189.5 173 60.1
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 1.1e-45 187.2 176 58.0
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 5.6e-45 184.9 180 55.0
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-44 183.7 180 53.3
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 4.8e-44 181.8 180 54.4
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 1.4e-43 180.3 179 54.2
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 4.5e-42 175.3 178 55.6
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 1.4e-40 170.2 173 55.5
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 1.0e-38 164.1 187 46.5
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 1.0e-38 164.1 187 46.5
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 1.2e-23 114.0 179 39.1
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 3.9e-22 109.0 146 41.1
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.1e-21 107.5 179 37.4
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.2e-20 103.2 152 36.2
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 3.7e-20 102.4 175 38.9
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 4.8e-20 102.1 178 35.4
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.8e-19 100.1 181 37.0
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 1.8e-19 100.1 197 35.5
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.8e-19 100.1 197 35.5
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 1.8e-19 100.1 164 34.8
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.4e-19 99.8 197 35.5
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 3.1e-19 99.4 197 35.0
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 6.9e-19 98.2 174 35.1
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 9.1e-19 97.8 164 36.0
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.2e-18 97.4 181 35.4
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 1.2e-18 97.4 138 37.7
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 1.2e-18 97.4 159 37.1
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.5e-18 97.1 155 36.1
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 2.0e-18 96.7 178 36.0
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 2.6e-18 96.3 184 32.6
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 5.9e-18 95.1 186 33.9
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 7.7e-18 94.7 149 38.3
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.7e-17 93.6 162 37.7
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 2.2e-17 93.2 191 33.5
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 2.9e-17 92.8 185 35.1
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 2.9e-17 92.8 176 36.4
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 6.5e-17 91.7 171 33.9
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 1.4e-16 90.5 153 34.0
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.9e-16 90.1 184 33.7
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 1.9e-16 90.1 180 33.9
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.5e-16 89.7 151 36.4
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.2e-16 89.4 175 32.6
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 3.2e-16 89.4 157 33.8
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 4.2e-16 89.0 154 37.0
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 4.2e-16 89.0 174 32.2
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.5e-16 88.6 176 30.7
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 7.2e-16 88.2 157 35.0
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 2.1e-15 86.7 153 34.0
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 4.7e-15 85.5 174 31.0
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 7.9e-15 84.7 184 29.3
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 7.9e-15 84.7 182 33.5
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.0e-14 84.3 186 32.8
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.4e-14 84.0 178 34.8
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 1.8e-14 83.6 180 31.7
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.8e-14 83.6 176 30.7
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.3e-14 83.2 169 35.5
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.3e-14 83.2 176 29.5
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 3.0e-14 82.8 190 30.5
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 3.9e-14 82.4 185 30.8
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 6.7e-14 81.6 184 31.0
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 6.7e-14 81.6 184 31.0
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 6.7e-14 81.6 151 35.8
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 6.7e-14 81.6 164 32.3
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 2.0e-13 80.1 190 31.1
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 4.4e-13 79.0 148 31.8
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 5.7e-13 78.6 164 31.7
TWI12G1373 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.7e-13 78.6 187 32.1
TWI60G0816 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 7.4e-13 78.2 187 32.1
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 9.7e-13 77.8 171 31.0
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 9.7e-13 77.8 159 34.6
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 9.7e-13 77.8 148 31.1
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 1.3e-12 77.4 163 30.1
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 2.8e-12 76.3 149 30.2
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 3.7e-12 75.9 183 28.4
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 4.8e-12 75.5 164 29.3
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 1.1e-11 74.3 178 30.9
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 2.4e-11 73.2 153 28.1
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.4e-11 73.2 169 30.2
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 3.1e-11 72.8 151 30.5
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 3.1e-11 72.8 151 30.5
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 3.1e-11 72.8 151 30.5
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 3.1e-11 72.8 151 30.5
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 3.1e-11 72.8 176 30.7
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 4.1e-11 72.4 151 30.5
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 4.1e-11 72.4 153 28.1
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 4.1e-11 72.4 151 30.5
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 5.3e-11 72.0 151 30.5
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 5.3e-11 72.0 173 30.6
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 7.0e-11 71.6 151 30.5
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 7.0e-11 71.6 153 28.8
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 7.0e-11 71.6 153 28.8
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 7.0e-11 71.6 149 29.5
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 9.1e-11 71.2 151 31.1
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 30.5
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 31.1
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 30.5
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 31.1
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 30.5
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 31.1
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 30.5
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 31.1
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 30.5
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-10 70.9 151 31.1
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 1.6e-10 70.5 174 28.7
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 1.6e-10 70.5 172 30.8
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 2.0e-10 70.1 177 31.1
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 2.6e-10 69.7 151 29.1
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 3.5e-10 69.3 151 29.8
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 3.5e-10 69.3 173 31.8
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 5.9e-10 68.6 139 30.2
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 7.7e-10 68.2 151 29.1
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 7.7e-10 68.2 135 31.1
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 1.3e-09 67.4 122 32.0
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 1.7e-09 67.0 151 29.1
Ciclev10002648m.g Citrus clementina HOM05D003556 ORTHO05D003404 2.9e-09 66.2 157 32.5
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 2.9e-09 66.2 185 29.2
HPP92_004349 Vanilla planifolia HOM05D014663 ORTHO05D001261 2.9e-09 66.2 173 30.1
HPP92_004352 Vanilla planifolia HOM05D014663 ORTHO05D001261 2.9e-09 66.2 173 30.1
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 5.0e-09 65.5 152 31.6
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 8.5e-09 64.7 173 31.2
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 2.5e-08 63.2 153 29.4
Cfa014665 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.2e-08 62.8 150 32.0
Cfa014668 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.2e-08 62.8 136 33.1
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 3.2e-08 62.8 160 28.1
Duzib084G0732 Durio zibethinus HOM05D001445 ORTHO05D001261 3.2e-08 62.8 186 26.9
MD06G1041900 Malus domestica HOM05D001445 ORTHO05D001261 3.2e-08 62.8 179 28.5
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 3.2e-08 62.8 167 27.5
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 4.2e-08 62.4 149 30.9
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 5.5e-08 62.0 153 28.8
Haze_04119 Corylus avellana HOM05D014310 ORTHO05D003404 9.4e-08 61.2 150 31.3
Manes.15G171900 Manihot esculenta HOM05D001445 ORTHO05D001261 1.6e-07 60.5 177 27.1
PSO081G0137 Papaver somniferum HOM05D001445 ORTHO05D001261 2.7e-07 59.7 163 27.6
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 3.6e-07 59.3 188 28.2
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.7e-07 58.9 178 29.8
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 1.4e-06 57.4 175 26.3
Thecc.03G235400 Theobroma cacao HOM05D001445 ORTHO05D001261 1.4e-06 57.4 154 26.0
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 2.3e-06 56.6 147 28.6
CARHR174490 Cardamine hirsuta HOM05D001445 ORTHO05D001261 2.3e-06 56.6 165 28.5
Migut.D00139 Erythranthe guttata HOM05D021624 ORTHO05D015999 2.3e-06 56.6 159 30.2
Lsat_1_v5_gn_6_117520 Lactuca sativa HOM05D058011 ORTHO05D001819 2.3e-06 56.6 170 31.8
Sopen01g035440 Solanum pennellii HOM05D001445 ORTHO05D001261 3.0e-06 56.2 172 29.7
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.0e-06 55.8 172 27.9
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 5.2e-06 55.5 180 29.4
Duzib205G1605 Durio zibethinus HOM05D001445 ORTHO05D001261 5.2e-06 55.5 154 26.6
Oeu002900.1 Olea europaea HOM05D001445 ORTHO05D001261 5.2e-06 55.5 148 31.8
unitig_22.g5237 Utricularia gibba HOM05D021624 ORTHO05D015999 5.2e-06 55.5 131 26.7
HPP92_021578 Vanilla planifolia HOM05D001445 ORTHO05D001261 5.2e-06 55.5 161 29.2
Cpa.g.sc29.3 Carica papaya HOM05D001445 ORTHO05D001261 6.7e-06 55.1 149 26.8


User provided reference genes

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