Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 4.7e-104 381.3 210 100.0
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 3.1e-71 272.3 210 71.0
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.2e-70 270.4 210 70.0
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 6.4e-69 264.6 206 69.9
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 2.9e-61 239.2 210 70.0
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 6.0e-59 231.5 215 57.2
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 3.9e-58 228.8 210 62.9
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 6.6e-58 228.0 210 67.6
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 2.8e-56 222.6 218 58.7
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.1e-55 220.7 205 65.9
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 6.9e-55 218.0 210 56.7
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 1.9e-52 209.9 212 55.2
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 4.2e-52 208.8 230 53.0
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 5.4e-52 208.4 213 57.3
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 7.1e-52 208.0 216 56.0
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 7.1e-52 208.0 214 57.5
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 9.3e-52 207.6 216 55.6
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 1.2e-51 207.2 207 59.9
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.1e-51 206.5 216 55.6
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 3.0e-50 202.6 211 55.5
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 3.0e-50 202.6 216 54.6
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 5.1e-50 201.8 214 57.0
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 6.6e-50 201.4 209 55.0
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 6.6e-50 201.4 214 54.2
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 8.7e-50 201.1 213 54.5
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.1e-49 200.7 210 54.3
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.9e-49 199.9 213 63.4
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.5e-49 199.5 220 53.6
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 4.3e-49 198.7 211 57.3
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 1.3e-48 197.2 213 54.9
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.3e-48 197.2 223 54.3
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 2.8e-48 196.1 206 54.4
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 3.6e-48 195.7 227 58.6
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 4.8e-48 195.3 217 52.5
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 4.8e-48 195.3 217 53.5
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 4.8e-48 195.3 164 64.0
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 1.1e-47 194.1 205 54.6
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.1e-47 194.1 208 55.3
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.4e-47 193.0 305 44.6
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 2.4e-47 193.0 208 56.2
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 3.1e-47 192.6 208 53.4
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 6.9e-47 191.4 219 51.1
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 9.0e-47 191.0 218 49.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 2.0e-46 189.9 219 52.1
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 7.6e-46 188.0 211 52.1
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 9.9e-46 187.6 220 51.8
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.3e-45 187.2 221 50.7
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 1.7e-45 186.8 143 66.4
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 3.8e-45 185.7 216 50.0
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.9e-44 183.3 209 49.3
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.4e-44 183.0 212 59.4
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 3.2e-44 182.6 207 51.2
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 3.2e-44 182.6 236 46.6
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 4.2e-44 182.2 210 51.0
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.2e-44 182.2 215 50.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 5.4e-44 181.8 257 45.1
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 5.4e-44 181.8 212 50.0
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 7.1e-44 181.4 219 51.1
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 7.1e-44 181.4 148 66.9
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.2e-43 180.6 206 51.0
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.2e-43 180.6 224 49.1
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.2e-43 180.6 236 46.6
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 1.6e-43 180.3 205 52.2
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.7e-43 179.5 218 50.9
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.0e-42 177.6 214 49.5
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 1.3e-42 177.2 208 50.5
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.8e-42 176.8 217 47.9
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.8e-42 176.8 210 50.0
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 2.3e-42 176.4 219 47.5
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.3e-42 176.4 210 49.0
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 5.1e-42 175.3 205 48.3
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 5.1e-42 175.3 205 48.3
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 5.1e-42 175.3 211 50.7
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 6.7e-42 174.9 207 47.3
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 6.7e-42 174.9 208 48.1
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.7e-42 174.5 216 50.5
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.3e-41 172.6 181 56.4
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 3.3e-41 172.6 211 50.2
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 7.4e-41 171.4 205 47.8
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 9.6e-41 171.0 205 47.8
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 2.1e-40 169.9 236 46.6
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 6.9e-39 164.9 228 46.9
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 9.0e-39 164.5 204 48.0
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.0e-37 161.0 283 42.8
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 2.2e-37 159.8 197 49.7
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 6.5e-37 158.3 210 43.3
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 8.4e-37 157.9 210 46.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.1e-36 157.5 237 43.5
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 1.4e-36 157.1 239 43.9
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.4e-36 157.1 141 63.8
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 4.2e-36 155.6 250 42.4
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 4.2e-36 155.6 210 42.9
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.2e-35 154.1 194 49.0
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.1e-31 141.0 205 52.7
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 5.5e-28 128.6 113 58.4
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 8.2e-24 114.8 84 69.0
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.3e-23 112.1 143 51.7
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 3.4e-22 109.4 145 49.7
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 4.5e-22 109.0 121 53.7
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 2.5e-20 103.2 81 58.0
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 3.2e-20 102.8 127 49.6
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 1.1e-17 94.4 218 34.9
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 1.8e-15 87.0 54 81.5
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 1.0e-13 81.3 70 57.1
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 6.5e-13 78.6 97 47.4
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.1e-11 73.6 46 73.9
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 2.3e-10 70.1 78 42.3
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.5e-09 67.4 78 41.0
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.6e-09 66.6 207 30.0
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 4.4e-09 65.9 107 36.4
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.7e-08 63.9 97 36.1
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.2e-08 63.5 126 34.9
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 2.8e-08 63.2 100 36.0
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 6.3e-08 62.0 85 38.8
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 8.2e-08 61.6 125 34.4
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 2.4e-07 60.1 104 32.7
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 2.4e-07 60.1 100 35.0
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 3.1e-07 59.7 85 38.8
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 9.1e-07 58.2 106 35.8
Manes.14G148900 Manihot esculenta HOM05D003946 ORTHO05D004485 9.1e-07 58.2 123 30.9
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 9.1e-07 58.2 100 34.0
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.2e-06 57.8 128 32.0
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 1.5e-06 57.4 120 33.3
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 1.5e-06 57.4 100 34.0
arahy.Tifrunner.gnm1.ann1.43EHF4 Arachis hypogaea HOM05D003946 ORTHO05D004485 2.6e-06 56.6 85 37.6
FAN08G3479 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.6e-06 56.6 50 64.0
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 2.6e-06 56.6 97 36.1
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 3.5e-06 56.2 105 31.4
Glyma.08G356700 Glycine max HOM05D003946 ORTHO05D004485 4.5e-06 55.8 97 34.0
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 4.5e-06 55.8 83 37.3
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 4.5e-06 55.8 130 31.5
Thecc.09G157800 Theobroma cacao HOM05D003946 ORTHO05D004485 4.5e-06 55.8 123 32.5
FAN04G1857 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.7e-06 55.1 50 62.0


User provided reference genes

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