Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 7.0e-273 943.3 476 100.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.6e-256 889.0 498 90.8
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.7e-255 885.6 498 90.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.7e-232 808.5 499 81.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 7.8e-232 807.0 503 81.9
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 4.3e-230 801.2 495 81.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 6.4e-226 787.3 495 81.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-224 781.9 500 79.8
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.9e-224 780.4 500 79.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-222 776.2 500 79.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.3e-221 773.1 494 79.4
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.3e-221 773.1 500 78.8
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-221 772.3 495 80.0
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.3e-213 746.5 496 75.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.1e-212 743.4 492 75.8
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.2e-211 740.0 494 77.1
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 6.5e-210 734.2 503 74.4
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.5e-210 734.2 501 75.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.7e-208 728.8 503 73.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.5e-208 728.4 490 74.7
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.9e-206 722.6 492 74.2
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.3e-205 719.9 493 73.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.1e-204 716.8 485 73.6
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-203 713.4 497 72.0
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.5e-203 713.0 504 71.8
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.5e-203 713.0 494 72.7
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 7.6e-203 710.7 491 73.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.2e-202 709.1 497 72.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 5.0e-202 708.0 495 72.7
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.1e-201 706.8 488 73.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.1e-201 706.8 496 72.0
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.4e-201 706.4 506 72.9
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.9e-201 706.1 491 72.9
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.5e-201 705.7 487 73.5
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.5e-201 705.7 487 73.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.2e-201 705.3 501 70.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 7.2e-201 704.1 488 73.2
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.6e-200 703.0 496 73.0
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.1e-200 702.6 496 71.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.8e-199 699.5 494 73.3
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.3e-199 699.1 486 72.6
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 3.9e-199 698.4 505 71.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 5.1e-199 698.0 494 70.4
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 5.1e-199 698.0 494 70.4
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.1e-198 696.8 494 70.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.5e-198 695.7 486 72.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 3.3e-198 695.3 491 70.9
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.4e-198 694.1 486 72.2
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 9.7e-198 693.7 486 72.0
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.8e-197 691.4 486 71.8
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.8e-196 689.5 496 69.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 5.3e-196 688.0 497 71.2
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 5.3e-196 688.0 496 70.2
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 4.5e-195 684.9 499 70.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.3e-194 683.3 486 71.4
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.7e-194 682.9 499 70.3
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.7e-194 682.9 499 70.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.2e-194 682.6 494 71.7
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 2.9e-194 682.2 509 69.0
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 5.0e-194 681.4 484 71.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.5e-194 680.6 496 70.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.5e-194 680.6 496 69.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.9e-193 679.5 496 68.8
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.2e-193 678.7 496 69.2
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 4.2e-193 678.3 494 70.9
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-193 678.3 496 68.5
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 4.2e-193 678.3 496 68.5
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.5e-193 677.9 496 69.2
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 7.2e-193 677.6 501 69.3
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 7.2e-193 677.6 487 71.0
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 9.4e-193 677.2 494 69.0
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 9.4e-193 677.2 496 68.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 9.4e-193 677.2 495 70.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 9.4e-193 677.2 490 69.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-192 676.8 496 69.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.9e-192 674.1 496 69.2
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.8e-191 672.9 494 70.2
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 3.0e-191 672.2 498 70.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 3.0e-191 672.2 482 70.5
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.9e-191 671.8 494 69.2
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.9e-191 671.8 494 69.2
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.9e-191 671.8 496 69.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.1e-191 671.4 496 68.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.7e-191 671.0 507 68.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.3e-190 668.3 496 68.5
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 7.4e-190 667.5 531 66.5
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-189 666.4 492 70.1
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.2e-189 666.0 495 69.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 8.2e-189 664.1 488 68.4
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.4e-188 663.3 507 67.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.5e-187 659.8 490 67.8
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.5e-187 659.8 487 68.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.5e-187 659.8 486 69.8
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.0e-187 659.4 499 67.7
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.8e-186 655.2 495 68.3
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 9.4e-185 650.6 498 68.1
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.2e-184 650.2 492 67.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 3.6e-184 648.7 475 69.7
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.7e-181 639.8 525 65.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.8e-181 638.3 503 65.2
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 6.3e-181 637.9 512 66.2
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 5.0e-178 628.2 456 70.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 4.2e-177 625.2 490 66.3
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.2e-176 623.6 571 59.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.6e-176 623.2 491 64.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.6e-176 623.2 490 64.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 3.0e-175 619.0 490 64.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.7e-175 617.8 584 56.8
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-174 615.9 494 65.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.7e-173 613.2 524 63.2
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-171 606.7 469 67.8
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.0e-171 606.3 496 65.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 4.5e-171 605.1 493 63.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.5e-169 599.4 490 62.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.2e-169 597.8 490 64.1
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.6e-168 596.7 497 59.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.6e-168 595.5 501 60.7
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.7e-168 595.1 494 62.1
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 4.0e-167 592.0 489 63.8
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.4e-166 588.6 501 62.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.4e-164 582.8 486 61.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-163 578.9 349 83.1
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-162 575.9 479 63.5
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.4e-159 567.0 492 59.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.4e-158 562.4 402 71.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-151 540.4 508 58.5
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-147 527.3 530 53.4
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 6.6e-146 521.5 458 58.5
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 8.6e-146 521.2 381 70.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.7e-144 515.4 402 69.7
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.1e-143 512.7 360 72.2
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.0e-142 510.0 493 55.0
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.0e-138 496.1 359 71.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 8.6e-138 494.6 544 52.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.6e-136 489.2 365 70.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.7e-133 480.3 399 63.9
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.9e-133 479.6 394 65.0
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.1e-129 467.6 357 67.8
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-123 447.6 272 82.0
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-123 446.4 410 62.0
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.6e-120 437.2 308 72.1
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.2e-120 435.3 280 78.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 6.0e-115 418.7 467 49.5
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.3e-113 412.9 363 60.1
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 9.9e-102 374.8 275 69.8
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.3e-89 332.8 232 71.6
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.3e-84 315.1 193 81.3
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-77 293.9 246 65.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 7.2e-76 288.9 479 39.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-69 268.5 184 75.0
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 3.1e-63 246.9 201 64.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 5.9e-62 242.7 217 61.8
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 3.6e-59 233.4 231 59.3
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-55 220.7 258 51.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 8.3e-48 195.7 113 82.3
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 3.1e-47 193.7 264 49.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.1e-47 193.4 126 75.4
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 9.1e-47 192.2 118 77.1
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 5.5e-44 183.0 147 64.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 9.5e-44 182.2 120 74.2
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.5e-41 172.6 99 80.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.5e-41 172.6 99 80.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.1e-39 168.7 127 68.5
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.2e-34 149.8 114 64.9
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 6.8e-34 149.4 207 44.0
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.0e-29 133.3 114 59.6
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.3e-24 118.6 72 80.6
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.9e-24 117.5 105 60.0
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 3.7e-24 117.1 69 81.2
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.0e-22 111.3 63 82.5
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.6e-22 110.2 74 73.0
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 7.3e-20 102.8 97 58.8
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.1e-19 101.3 65 75.4
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.8e-18 98.2 65 72.3
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.3e-18 97.8 67 73.1
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.2e-18 96.7 65 70.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 7.5e-17 92.8 65 80.0
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.4e-15 88.6 77 61.0
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.3e-13 81.3 189 34.9
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.2e-11 75.5 46 71.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 5.2e-10 70.1 38 81.6


User provided reference genes

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