Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 4.0e-130 469.2 488 100.0
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 4.0e-74 283.1 213 64.8
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 3.4e-73 280.0 217 65.4
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 8.7e-69 265.4 172 70.3
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 1.5e-68 264.6 206 61.7
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.6e-67 261.2 172 69.2
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.0e-64 251.9 221 57.5
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.4e-63 248.1 180 65.0
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 5.5e-63 246.1 165 67.3
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 9.3e-63 245.4 209 57.4
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 1.0e-61 241.9 210 57.6
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 6.7e-61 239.2 194 58.2
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 3.3e-60 236.9 220 54.1
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 4.3e-60 236.5 165 64.8
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.4e-60 235.7 209 56.9
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 8.2e-59 232.3 217 54.8
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.1e-58 231.9 207 55.6
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 3.1e-58 230.3 225 54.2
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 4.1e-58 229.9 218 53.7
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 4.1e-58 229.9 212 57.1
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 4.1e-58 229.9 211 56.4
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 6.9e-58 229.2 220 53.2
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 9.0e-58 228.8 206 54.9
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 5.9e-57 226.1 222 55.0
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 7.6e-57 225.7 207 55.6
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 1.0e-56 225.3 225 52.9
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 1.3e-56 224.9 177 62.7
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 2.2e-56 224.2 180 61.1
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 2.9e-56 223.8 216 53.7
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 8.5e-56 222.2 161 62.7
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.9e-55 221.1 215 54.0
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 3.2e-55 220.3 207 53.1
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 9.3e-55 218.8 215 53.5
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.2e-54 218.4 194 54.6
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.2e-54 218.4 184 57.6
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 2.1e-54 217.6 216 52.8
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 6.1e-54 216.1 211 52.1
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.0e-53 215.3 219 51.6
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.3e-53 214.2 217 52.1
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 3.0e-53 213.8 163 59.5
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.0e-53 213.8 177 57.6
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 3.0e-53 213.8 173 59.5
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 6.7e-53 212.6 211 51.7
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 1.5e-52 211.5 211 51.2
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 1.9e-52 211.1 211 50.7
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 3.3e-52 210.3 177 59.3
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 3.3e-52 210.3 215 51.2
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 4.3e-52 209.9 206 51.0
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 4.3e-52 209.9 192 52.6
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 4.3e-52 209.9 217 51.2
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 5.7e-52 209.5 177 55.9
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 9.7e-52 208.8 196 55.1
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 1.3e-51 208.4 179 53.6
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 1.6e-51 208.0 217 49.3
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.6e-51 208.0 209 49.3
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.6e-51 208.0 192 53.6
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 4.8e-51 206.5 142 66.2
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 8.2e-51 205.7 164 60.4
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 3.1e-50 203.8 184 56.5
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 4.1e-50 203.4 192 51.6
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 3.4e-49 200.3 208 46.6
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 5.9e-49 199.5 213 48.4
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 2.2e-48 197.6 210 48.6
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 2.2e-48 197.6 210 48.6
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 3.8e-48 196.8 213 48.8
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 5.0e-48 196.4 211 51.2
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 5.0e-48 196.4 214 47.7
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 6.5e-48 196.1 148 58.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 1.1e-47 195.3 186 52.2
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 5.5e-47 193.0 181 48.1
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 7.2e-47 192.6 220 47.7
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 9.4e-47 192.2 213 49.3
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 1.2e-46 191.8 204 50.0
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 2.1e-46 191.0 152 57.2
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.7e-46 190.7 214 48.6
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.4e-45 188.3 205 48.8
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 6.7e-45 186.0 199 49.2
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 6.7e-45 186.0 199 49.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 6.7e-45 186.0 219 47.0
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 1.5e-44 184.9 186 51.1
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 2.6e-44 184.1 207 48.3
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.3e-43 181.8 206 46.1
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 1.8e-42 177.9 200 46.5
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.2e-41 175.3 107 78.5
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-41 174.9 217 41.9
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 2.6e-41 174.1 142 55.6
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.2e-40 171.0 207 46.4
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 3.2e-39 167.2 166 50.0
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 7.2e-39 166.0 111 69.4
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 9.4e-39 165.6 217 44.2
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 9.7e-36 155.6 197 44.2
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 6.3e-35 152.9 214 37.9
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 6.3e-35 152.9 214 37.9
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.8e-34 151.4 107 68.2
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.1e-34 150.6 122 58.2
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.2e-33 148.7 108 62.0
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.7e-32 144.8 207 41.1
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 6.5e-32 142.9 109 63.3
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.5e-31 141.7 107 61.7
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 3.2e-23 114.0 217 36.9
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 4.2e-23 113.6 88 56.8
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 1.0e-16 92.4 214 34.1
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 1.3e-16 92.0 209 33.0
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 7.8e-09 66.2 45 71.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.8e-09 66.2 45 71.1
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 1.3e-08 65.5 139 28.8
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 1.3e-08 65.5 45 60.0
SGA_v2.0_scaffold32G13171 Striga asiatica HOM05D006980 ORTHO05D008704 1.7e-08 65.1 47 63.8
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 8.6e-08 62.8 37 75.7
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 1.9e-07 61.6 53 50.9
Zm00001eb423490 Zea mays HOM05D006980 ORTHO05D008704 6.1e-06 56.6 43 58.1
Zm00001eb434620 Zea mays HOM05D006980 ORTHO05D008704 8.0e-06 56.2 43 58.1


User provided reference genes

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