Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 8.8e-63 243.8 158 100.0
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 2.4e-36 156.0 162 57.4
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 1.3e-34 150.2 151 60.3
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 1.5e-30 136.7 167 55.7
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 1.1e-28 130.6 163 57.1
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 1.7e-26 123.2 172 52.9
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 1.2e-22 110.5 154 46.8
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 3.4e-22 109.0 175 43.4
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 2.9e-21 105.9 169 45.6
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 1.9e-20 103.2 175 42.3
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 5.4e-20 101.7 172 43.0
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 5.4e-20 101.7 161 42.2
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 7.0e-20 101.3 155 43.2
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 3.5e-19 99.0 164 43.9
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 1.0e-18 97.4 164 40.2
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 1.3e-18 97.1 170 41.8
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 2.3e-18 96.3 158 44.3
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 3.0e-18 95.9 159 42.1
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 6.6e-18 94.7 174 40.2
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 6.6e-18 94.7 153 45.8
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 6.6e-18 94.7 153 45.8
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 1.1e-17 94.0 162 43.2
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.5e-17 93.6 153 45.1
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 1.5e-17 93.6 166 38.6
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 1.9e-17 93.2 168 42.3
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 2.5e-17 92.8 155 45.8
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 4.3e-17 92.0 174 39.7
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 5.6e-17 91.7 155 45.2
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 7.3e-17 91.3 164 42.1
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 1.2e-16 90.5 179 40.8
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 1.2e-16 90.5 161 42.2
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 1.6e-16 90.1 164 42.1
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 2.1e-16 89.7 152 40.1
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 2.8e-16 89.4 158 44.9
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 3.6e-16 89.0 172 40.7
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 3.6e-16 89.0 179 39.1
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 4.7e-16 88.6 174 39.7
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 4.7e-16 88.6 165 40.6
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 4.7e-16 88.6 154 42.9
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 8.1e-16 87.8 152 41.4
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 3.1e-15 85.9 161 40.4
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 1.2e-14 84.0 182 37.4
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 2.0e-14 83.2 173 40.5
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 2.0e-14 83.2 178 35.4
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 2.6e-14 82.8 153 39.2
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 2.6e-14 82.8 157 39.5
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 3.4e-14 82.4 157 39.5
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 4.4e-14 82.0 157 36.9
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 4.4e-14 82.0 105 45.7
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 4.4e-14 82.0 156 39.7
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 7.5e-14 81.3 158 38.6
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 7.5e-14 81.3 140 39.3
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 9.8e-14 80.9 158 38.6
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 2.9e-13 79.3 154 39.0
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 8.3e-13 77.8 158 36.7
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 2.4e-12 76.3 160 39.4
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 4.1e-12 75.5 157 42.7
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 5.4e-12 75.1 159 37.7
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 1.6e-11 73.6 155 34.8
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 2.1e-11 73.2 157 35.7
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 4.6e-11 72.0 186 38.7
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 7.8e-11 71.2 122 43.4
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 1.0e-10 70.9 167 35.9
C05p00230 Brassica napus HOM05D007580 ORTHO05D009620 2.3e-10 69.7 156 34.6
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 2.3e-10 69.7 164 35.4
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 3.0e-10 69.3 153 36.6
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 3.9e-10 68.9 148 36.5
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 6.6e-10 68.2 154 37.7
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 8.6e-10 67.8 159 38.4
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 1.9e-09 66.6 154 37.0
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 5.6e-09 65.1 156 35.9
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.2e-08 63.9 156 35.3
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 8.1e-08 61.2 171 29.2
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 1.1e-07 60.8 160 35.0
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 1.4e-07 60.5 183 33.3
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 1.4e-07 60.5 68 48.5
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 1.8e-07 60.1 184 33.2
AUR62026657 Chenopodium quinoa HOM05D007580 ORTHO05D009620 4.0e-07 58.9 102 40.2
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 6.8e-07 58.2 157 34.4
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 1.2e-06 57.4 140 39.3
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 4.4e-06 55.5 156 32.7


User provided reference genes

Program Settings