Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.8e-190 669.1 338 100.0
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.4e-187 658.7 338 97.9
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 7.1e-187 657.1 338 97.3
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 9.3e-187 656.8 338 97.0
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 6.0e-186 654.1 340 97.4
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.3e-183 646.4 338 95.6
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.3e-183 646.4 338 95.6
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.3e-183 646.4 338 95.6
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.3e-183 646.4 338 95.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 2.8e-183 645.2 337 95.8
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.4e-182 642.1 336 95.2
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.4e-181 638.3 338 94.7
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.7e-180 636.0 338 94.1
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 91.4
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 4.8e-175 617.8 338 90.8
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 6.3e-175 617.5 338 90.2
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 6.3e-175 617.5 336 90.8
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 8.2e-175 617.1 338 90.2
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 8.2e-175 617.1 330 92.7
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 91.1
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 89.9
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 90.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.8e-174 615.9 339 90.3
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 3.1e-174 615.1 336 90.5
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 5.3e-174 614.4 331 91.5
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.2
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.5e-173 612.8 335 90.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 2.6e-173 612.1 337 90.8
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 90.0
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.9e-173 610.9 332 91.0
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 89.4
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 90.0
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 90.0
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.7e-172 609.4 338 89.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.7e-172 609.4 338 89.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-172 609.0 335 89.9
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.2e-172 609.0 339 89.7
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.1
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.8e-172 608.2 338 88.8
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 88.8
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 5.0e-172 607.8 338 89.1
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 88.5
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.0e-172 607.8 338 89.1
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 6.5e-172 607.4 336 89.3
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.5e-172 607.4 338 88.8
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 8.4e-172 607.1 339 89.4
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.1e-171 606.7 335 89.6
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.4e-171 606.3 338 89.1
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.4e-171 606.3 337 89.3
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 7.2e-171 604.0 338 88.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 9.3e-171 603.6 338 88.2
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 9.3e-171 603.6 333 90.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.2e-170 603.2 338 87.9
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.6e-170 602.8 338 87.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 87.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 87.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 87.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 89.1
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 2.1e-170 602.4 332 89.2
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.1e-170 602.4 338 88.5
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.7e-170 602.1 333 89.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.7e-170 602.1 338 88.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.6e-170 601.7 338 88.5
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 6.1e-170 600.9 332 88.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.0e-169 600.1 338 88.2
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-169 599.0 339 88.2
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 6.7e-169 597.4 339 87.9
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.7e-169 597.4 339 87.9
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-167 593.2 340 87.1
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-167 592.8 339 87.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.6e-167 592.8 339 87.0
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.6e-167 592.8 338 86.4
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.8e-167 592.0 332 87.7
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.7e-167 591.7 325 91.1
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 4.8e-167 591.3 332 87.3
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.1e-166 588.2 338 86.4
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 5.3e-166 587.8 332 87.3
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 5.9e-165 584.3 334 86.8
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 5.9e-165 584.3 378 78.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 6.5e-164 580.9 353 82.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.9e-163 579.3 335 84.5
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.2e-163 578.6 336 83.0
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.2e-162 576.6 332 86.1
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 6.1e-162 574.3 309 91.3
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 6.1e-162 574.3 317 89.3
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.9
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 83.6
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.4e-161 573.2 336 83.6
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.4e-161 573.2 336 83.6
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.4e-161 573.2 317 89.9
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.4e-161 573.2 335 83.3
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.0e-161 572.0 319 89.3
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 82.7
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 5.1e-161 571.2 334 83.5
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 83.3
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.1e-160 570.1 334 83.2
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.1e-160 570.1 334 83.5
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.6e-160 568.9 336 83.0
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 2.6e-160 568.9 336 82.7
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.6e-160 568.9 334 83.2
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 2.6e-160 568.9 338 82.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.6e-160 568.9 334 83.2
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 3.3e-160 568.5 334 82.9
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.3e-160 568.5 335 83.3
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 7.4e-160 567.4 336 82.4
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.4e-160 567.4 320 88.4
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.3e-159 566.6 309 90.0
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 2.8e-159 565.5 336 82.4
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 2.8e-159 565.5 338 84.9
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 6.3e-159 564.3 327 83.2
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 8.2e-159 563.9 337 81.9
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 4.1e-158 561.6 351 79.5
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.1e-158 561.6 339 84.4
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 5.3e-158 561.2 336 82.1
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.3e-158 561.2 336 81.0
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 5.3e-158 561.2 334 82.6
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 6.5e-156 554.3 319 85.3
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 4.7e-154 548.1 336 83.0
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 2.2e-151 539.3 334 76.3
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 2.8e-151 538.9 378 75.4
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 6.3e-151 537.7 315 83.5
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 3.1e-150 535.4 341 74.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 7.0e-150 534.3 295 90.8
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.6e-149 532.3 337 76.9
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.9e-148 528.9 334 75.7
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.1e-147 526.9 334 75.4
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.2e-147 525.0 418 67.7
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 9.1e-142 507.3 363 72.5
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.6e-138 496.5 271 90.0
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.2e-137 491.5 338 76.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 7.5e-136 487.6 263 92.0
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.7e-135 485.3 263 92.0
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.7e-135 485.3 263 92.0
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 7.0e-134 481.1 316 73.4
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 5.9e-133 478.0 336 75.0
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 4.0e-129 465.3 336 73.2
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 9.5e-123 444.1 343 67.3
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 3.7e-119 432.2 251 84.1
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 4.6e-117 425.2 238 87.0
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.8e-113 413.3 315 61.6
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 8.3e-111 404.4 251 80.1
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 3.3e-107 392.5 245 76.3
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 5.6e-107 391.7 216 88.9
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.3e-100 369.8 328 54.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.3e-100 369.8 330 57.6
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 6.5e-55 218.8 134 80.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.9e-44 183.0 168 58.3
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.4e-33 147.9 180 53.3
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 4.2e-30 136.3 79 83.5
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-27 127.9 80 76.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 73 80.8
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 5.3e-25 119.4 74 77.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-20 105.1 109 56.9
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.1e-14 85.1 51 78.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.8e-13 80.5 61 72.1
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.1e-13 79.3 42 85.7
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.2e-12 76.3 57 71.9
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.8e-10 70.5 118 37.3
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 6.6e-07 59.3 60 56.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 6.6e-07 59.3 60 56.7
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.9e-06 57.8 125 36.0
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 1.9e-06 57.8 86 44.2


User provided reference genes

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