Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 2.2e-300 1035.0 591 100.0
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.3e-195 685.6 448 82.6
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 8.3e-191 671.0 448 80.4
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.2e-190 669.1 448 79.7
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.0e-188 662.5 448 79.0
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 2.8e-186 656.0 448 77.9
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 1.8e-185 653.3 592 70.6
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 1.1e-182 644.0 448 78.1
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 2.7e-181 639.4 448 76.8
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 6.8e-177 624.8 448 77.0
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 3.8e-175 619.0 447 74.7
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 4.5e-152 542.3 451 66.5
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 2.2e-151 540.0 454 66.3
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 2.2e-151 540.0 453 66.7
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 6.5e-151 538.5 450 66.2
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 4.2e-150 535.8 450 65.3
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.6e-149 533.9 451 66.1
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 4.3e-147 525.8 454 63.9
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 7.4e-147 525.0 455 64.4
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 9.6e-147 524.6 455 64.4
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 9.6e-147 524.6 454 63.9
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 6.9e-145 518.5 448 65.0
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.5e-144 517.3 447 64.7
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 2.2e-143 513.5 453 62.5
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 6.5e-143 511.9 449 63.7
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 4.2e-142 509.2 449 63.7
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 1.6e-141 507.3 450 63.1
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 7.9e-141 505.0 450 63.1
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 7.9e-141 505.0 450 63.3
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 7.9e-141 505.0 445 63.6
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.0e-140 504.6 448 62.1
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 6.7e-140 501.9 447 63.1
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 3.3e-139 499.6 458 62.4
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 7.4e-139 498.4 480 58.8
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 1.4e-137 494.2 476 59.7
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 9.0e-137 491.5 461 61.2
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 1.2e-136 491.1 429 63.9
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.0e-135 488.0 457 61.3
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 6.5e-135 485.3 496 56.2
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 6.5e-135 485.3 455 61.3
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 1.1e-134 484.6 436 61.7
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.1e-134 484.6 473 59.0
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 1.4e-134 484.2 473 59.0
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 4.2e-134 482.6 428 64.0
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 9.4e-134 481.5 435 62.5
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 4.6e-133 479.2 446 60.3
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.4e-132 477.6 507 54.8
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 4.3e-131 472.6 459 58.4
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.7e-130 470.7 459 59.3
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 4.8e-130 469.2 415 62.2
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.4e-129 466.8 440 58.6
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 3.1e-129 466.5 446 59.0
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 5.3e-129 465.7 422 62.1
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 9.1e-129 464.9 452 58.8
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 2.2e-127 460.3 444 59.0
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.7e-125 452.6 469 57.4
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 6.1e-125 452.2 453 58.1
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 3.0e-124 449.9 453 57.8
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 6.7e-124 448.7 450 55.6
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 6.7e-124 448.7 441 58.5
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 9.7e-123 444.9 451 57.2
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 1.3e-122 444.5 446 56.1
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.4e-121 441.0 444 56.3
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.8e-121 440.7 455 55.6
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 3.1e-121 439.9 479 53.4
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 4.1e-121 439.5 557 49.0
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 5.3e-121 439.1 443 55.8
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 2.6e-120 436.8 446 55.8
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 8.0e-117 425.2 478 52.7
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 1.4e-116 424.5 472 52.1
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 1.8e-116 424.1 448 54.5
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 2.3e-116 423.7 514 50.2
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 4.4e-115 419.5 472 52.1
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 2.8e-114 416.8 474 51.7
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 4.8e-114 416.0 472 51.7
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.4e-113 413.7 403 58.8
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 9.1e-113 411.8 479 53.0
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 2.7e-112 410.2 402 58.7
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 6.5e-111 405.6 443 52.4
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 7.2e-110 402.1 434 55.8
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.6e-109 401.0 454 50.9
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 6.1e-109 399.1 450 50.9
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 1.0e-108 398.3 457 52.5
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 5.2e-108 396.0 454 52.4
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 1.2e-107 394.8 451 51.0
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 1.5e-99 367.9 428 49.8
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 2.3e-95 354.0 447 49.9
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.8e-92 344.4 443 49.2
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.2e-88 331.6 454 46.5
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 2.7e-88 330.5 475 44.6
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 8.0e-85 318.9 463 44.1
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 4.0e-84 316.6 448 43.3
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.6e-77 294.7 476 41.6
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 2.2e-74 284.3 321 52.6
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 5.1e-71 273.1 449 41.2
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 5.1e-71 273.1 212 68.4
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 5.2e-68 263.1 464 40.1
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 2.6e-67 260.8 305 49.8
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 3.2e-65 253.8 280 55.0
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 7.1e-65 252.7 300 49.0
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 2.1e-61 241.1 612 33.5
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 1.4e-60 238.4 371 39.1
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 4.0e-60 236.9 165 77.0
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.4e-58 229.6 214 59.8
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.5e-51 208.4 259 50.2
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.5e-51 208.4 150 76.7
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 3.2e-49 200.7 161 68.3
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.6e-48 196.8 219 53.9
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 4.8e-45 186.8 224 48.7
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 1.6e-40 171.8 520 30.0
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.3e-39 167.9 580 27.4
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 8.7e-39 166.0 174 55.2
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 5.3e-28 130.2 101 69.3
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.3e-23 115.5 94 71.3
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.1e-23 113.6 91 71.4
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 6.7e-23 113.2 128 57.0
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.5e-22 111.3 90 74.4
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 3.7e-21 107.5 74 71.6
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 6.9e-20 103.2 86 70.9
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 1.7e-18 98.6 72 77.8
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 2.2e-13 81.6 96 87.5
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 2.0e-11 75.1 47 78.7
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 3.4e-11 74.3 52 71.2
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 5.9e-11 73.6 94 64.9
Ah.01g007070 Amaranthus hybridus HOM05D006534 ORTHO05D006434 5.0e-10 70.5 95 71.6
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 5.5e-09 67.0 94 78.7
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 3.6e-08 64.3 95 81.1
Atru.chr5.2330 Acer truncatum HOM05D006534 ORTHO05D006434 6.1e-08 63.5 94 77.7
Ca_02937_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 6.1e-08 63.5 94 62.8
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 6.1e-08 63.5 94 67.0
TWI14G1419 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 6.1e-08 63.5 94 71.3
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 7.9e-08 63.2 62 58.1
CsaV3_4G000160 Cucumis sativus L. HOM05D006534 ORTHO05D006434 1.0e-07 62.8 94 71.3
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 1.8e-07 62.0 94 39.4
ClCG10G010140 Citrullus lanatus HOM05D006534 ORTHO05D006434 1.8e-07 62.0 94 71.3
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 6.7e-07 60.1 51 66.7
Glyma.01G242200 Glycine max HOM05D006534 ORTHO05D006434 8.8e-07 59.7 99 80.8
PGSC0003DMG400021608 Solanum tuberosum HOM05D006534 ORTHO05D006434 8.8e-07 59.7 90 72.2
CiPaw.05G018800 Carya illinoinensis HOM05D006534 ORTHO05D006434 1.1e-06 59.3 94 69.1
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 1.1e-06 59.3 94 75.5
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 2.0e-06 58.5 94 69.1
Oeu013796.1 Olea europaea HOM05D006534 ORTHO05D006434 2.6e-06 58.2 94 71.3
Sabra09G0066500 Salix brachista HOM05D006534 ORTHO05D006434 3.3e-06 57.8 89 79.8
Lj5g0022695 Lotus japonicus HOM05D006534 ORTHO05D006434 5.7e-06 57.0 95 65.3
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 9.7e-06 56.2 94 70.2


User provided reference genes

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