Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 0.0e+00 1280.0 733 100.0
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 5.3e-195 685.3 771 57.1
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 8.5e-193 677.9 773 57.4
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.0e-190 671.0 779 56.4
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 2.5e-189 666.4 752 59.7
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 3.2e-176 622.9 774 54.7
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 7.2e-176 621.7 752 58.1
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 1.2e-167 594.3 747 53.4
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.0e-161 574.7 765 51.4
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 9.4e-160 568.2 771 54.9
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 2.4e-155 553.5 775 50.2
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 6.1e-143 512.3 712 53.8
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 4.6e-138 496.1 690 54.1
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 1.3e-81 308.5 687 40.9
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 3.3e-80 303.9 868 35.1
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 5.7e-80 303.1 858 35.0
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 2.9e-76 290.8 868 35.0
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 7.2e-75 286.2 683 39.1
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 3.0e-73 280.8 661 38.3
Ca_11451_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.7e-60 238.4 568 37.7
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 1.7e-60 238.4 618 37.9
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 2.2e-60 238.0 624 38.0
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.8e-54 218.4 578 37.0
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 2.0e-53 214.9 595 36.3
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 8.5e-52 209.5 594 36.0
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 1.4e-49 202.2 840 31.1
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.8e-49 201.8 774 31.0
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 1.3e-47 195.7 623 34.0
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.3e-46 190.3 774 32.8
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.3e-46 190.3 784 31.6
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.3e-44 185.7 578 35.5
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 2.2e-44 184.9 588 38.1
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.9e-44 184.5 830 31.9
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 3.8e-44 184.1 511 37.0
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 2.1e-42 178.3 708 31.9
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 2.7e-42 177.9 626 38.3
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.6e-42 177.6 583 32.6
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 4.0e-41 174.1 633 31.8
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 5.2e-41 173.7 564 34.9
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.2e-40 172.6 732 30.3
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.5e-40 172.2 780 31.7
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 7.5e-40 169.9 562 34.5
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 1.7e-39 168.7 618 34.8
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 8.3e-39 166.4 708 32.1
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 1.4e-38 165.6 544 35.3
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.4e-38 163.7 639 31.6
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.4e-38 163.7 692 32.1
Lalb_Chr06g0171411 Lupinus albus HOM05D003265 ORTHO05D003819 1.6e-37 162.2 440 44.1
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.7e-37 161.4 830 30.1
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 4.5e-37 160.6 713 31.7
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 5.9e-37 160.2 646 32.0
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.9e-37 160.2 654 30.7
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 7.7e-37 159.8 639 35.8
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.7e-36 158.7 580 36.4
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 1.7e-36 158.7 574 32.4
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.9e-35 155.2 567 33.0
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.5e-35 154.8 550 34.4
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 5.5e-35 153.7 571 34.9
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 3.6e-34 151.0 806 28.2
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.6e-34 151.0 653 35.1
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.8e-33 148.7 553 31.6
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 4.0e-33 147.5 596 31.0
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 5.2e-33 147.1 519 34.3
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 2.6e-32 144.8 609 29.9
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 5.7e-32 143.7 591 32.3
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.7e-31 142.1 536 31.7
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 1.7e-31 142.1 618 30.4
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 2.2e-31 141.7 531 33.3
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 5.4e-30 137.1 651 30.0
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.2e-29 136.0 319 39.8
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 1.6e-29 135.6 694 31.4
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 5.9e-29 133.7 701 29.4
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 7.8e-29 133.3 504 31.2
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.0e-28 132.9 582 30.1
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 1.3e-28 132.5 217 46.5
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 2.9e-28 131.3 785 27.1
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 2.9e-28 131.3 262 41.2
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.5e-27 129.0 542 30.6
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 3.3e-27 127.9 732 28.3
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 9.5e-27 126.3 566 32.0
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 2.8e-26 124.8 647 29.1
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 2.8e-26 124.8 639 29.7
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.8e-25 122.1 591 29.8
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 2.3e-25 121.7 615 28.9
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.3e-25 121.7 724 29.0
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 4.0e-25 120.9 602 29.2
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 8.9e-25 119.8 560 30.5
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 3.4e-24 117.9 149 52.3
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 7.5e-24 116.7 550 30.0
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 7.5e-24 116.7 638 28.5
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 2.9e-23 114.8 436 32.1
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 6.4e-23 113.6 552 30.8
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.1e-22 112.8 528 30.7
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.1e-22 110.9 486 31.5
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 5.4e-22 110.5 475 29.9
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 9.2e-22 109.8 462 35.1
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 9.2e-22 109.8 611 34.4
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.2e-21 109.4 569 30.8
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 6.0e-21 107.1 557 29.8
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 7.8e-21 106.7 529 29.5
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.0e-20 106.3 663 28.1
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 3.9e-20 104.4 597 27.5
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 6.6e-20 103.6 626 26.5
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 1.1e-19 102.8 438 31.3
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 1.5e-19 102.4 518 27.6
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 3.3e-19 101.3 100 58.0
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.3e-19 100.9 624 30.6
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 4.3e-19 100.9 566 28.6
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 4.3e-19 100.9 588 29.4
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 7.3e-19 100.1 566 29.5
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 7.3e-19 100.1 511 29.9
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.2e-18 99.4 606 27.6
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 2.8e-18 98.2 506 27.3
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.8e-18 98.2 610 27.2
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 2.8e-18 98.2 510 28.4
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 8.0e-18 96.7 576 29.3
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 1.1e-17 96.3 320 35.0
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 1.1e-17 96.3 320 35.0
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 1.1e-17 96.3 527 36.1
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.4e-17 95.9 581 29.4
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.2e-16 92.8 575 27.0
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.2e-16 92.8 566 28.3
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 1.5e-16 92.4 239 36.8
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 2.6e-16 91.7 329 34.0
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 3.4e-16 91.3 567 28.7
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 3.4e-16 91.3 704 26.3
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.8e-16 90.5 584 30.1
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 1.3e-15 89.4 553 25.9
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 1.7e-15 89.0 580 29.8
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 2.9e-15 88.2 118 46.6
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 2.9e-15 88.2 118 46.6
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 3.7e-15 87.8 596 25.7
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 6.4e-15 87.0 648 26.4
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.4e-14 85.9 571 32.7
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 2.4e-14 85.1 495 28.9
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 3.2e-14 84.7 525 32.4
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 3.2e-14 84.7 160 39.4
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 4.1e-14 84.3 485 26.8
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 4.1e-14 84.3 663 27.8
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.0e-14 83.6 540 27.2
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 1.6e-13 82.4 462 31.2
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.1e-13 82.0 561 28.9
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.1e-13 82.0 572 29.7
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.7e-13 81.6 145 43.4
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 3.5e-13 81.3 531 31.8
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 3.5e-13 81.3 183 38.3
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.6e-13 80.9 169 40.8
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 4.6e-13 80.9 499 28.1
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.0e-13 80.5 147 42.9
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 2.3e-12 78.6 206 36.9
CSS0009096 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.6e-12 76.6 135 43.7
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.6e-12 76.6 135 43.7
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 2.5e-11 75.1 484 28.5
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.3e-11 73.6 172 42.4
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.2e-10 72.8 560 26.8
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.8e-10 71.6 450 27.3
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 3.6e-10 71.2 92 48.9
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 3.6e-10 71.2 441 27.9
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 6.2e-10 70.5 557 26.2
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.1e-09 69.7 456 26.5
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 1.4e-09 69.3 608 27.0
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 3.1e-09 68.2 133 39.1
Lalb_Chr06g0171401 Lupinus albus HOM05D003265 ORTHO05D003819 3.1e-09 68.2 87 47.1
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 4.0e-09 67.8 627 25.7
CSS0008335 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.2e-09 67.4 425 25.4
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 6.8e-09 67.0 404 29.5
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 8.9e-09 66.6 582 26.1
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 8.9e-09 66.6 527 27.9
Lalb_Chr06g0171391 Lupinus albus HOM05D003265 ORTHO05D003819 8.9e-09 66.6 104 44.2
Actinidia13105 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.2e-08 66.2 105 40.0
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.2e-08 66.2 651 24.6
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 1.2e-08 66.2 474 25.9
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 2.0e-08 65.5 593 24.5
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 3.4e-08 64.7 613 23.7
ECA246G3041 Erigeron canadensis HOM05D003265 ORTHO05D003819 3.4e-08 64.7 186 28.5
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 4.4e-08 64.3 497 24.9
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.3e-07 62.8 471 27.0
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 4.9e-07 60.8 560 24.1
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 4.9e-07 60.8 459 27.0
ECA238G4120 Erigeron canadensis HOM05D021052 ORTHO05D020586 4.9e-07 60.8 205 29.3
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 6.4e-07 60.5 460 30.2
Sabra05G0023700 Salix brachista HOM05D003265 ORTHO05D003819 6.4e-07 60.5 66 50.0
CDE09G0374 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 1.4e-06 59.3 229 30.1
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.9e-06 58.9 485 27.4
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 4.1e-06 57.8 280 31.4
THA.LOC104824221 Tarenaya hassleriana HOM05D003265 ORTHO05D013953 4.1e-06 57.8 90 40.0
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.4e-06 57.4 579 26.9
BcaC02g07549 Brassica carinata HOM05D003265 ORTHO05D003819 9.2e-06 56.6 431 29.7


User provided reference genes

Program Settings