Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 4.0e-148 528.1 271 100.0
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 3.3e-94 349.0 284 67.6
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 9.7e-94 347.4 288 68.4
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 4.5e-91 338.6 260 71.9
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 6.5e-90 334.7 287 63.8
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 9.4e-89 330.9 284 65.1
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 7.9e-88 327.8 286 64.7
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 5.0e-82 308.5 280 63.6
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.1e-65 254.2 280 53.9
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 6.1e-64 248.4 183 70.5
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 6.8e-63 245.0 281 50.9
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 7.5e-62 241.5 275 52.4
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 2.2e-61 240.0 240 55.4
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 6.3e-61 238.4 278 49.3
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 7.0e-60 235.0 284 51.8
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 7.0e-60 235.0 252 56.7
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 1.0e-58 231.1 259 51.7
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.7e-58 230.3 280 51.1
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 3.8e-58 229.2 283 51.2
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 6.6e-58 228.4 186 68.8
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 8.6e-58 228.0 171 73.1
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 2.8e-56 223.0 289 48.8
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 8.9e-55 218.0 288 47.9
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.0e-54 216.9 287 47.7
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 4.4e-54 215.7 243 51.0
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 9.8e-54 214.5 294 45.9
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 8.3e-53 211.5 289 46.0
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 1.1e-52 211.1 280 46.4
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 4.1e-52 209.1 270 47.4
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 9.2e-52 208.0 279 48.4
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 7.8e-51 204.9 296 48.0
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 2.9e-50 203.0 301 46.2
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 6.6e-50 201.8 295 44.4
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 1.5e-49 200.7 183 59.6
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.9e-49 200.3 281 48.8
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 2.5e-49 199.9 292 45.5
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 3.3e-49 199.5 282 45.7
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 4.3e-49 199.1 276 47.5
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 5.6e-49 198.7 280 48.6
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 1.6e-48 197.2 286 47.6
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.1e-48 196.8 282 47.9
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.1e-48 196.8 296 42.2
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.3e-47 193.4 309 41.1
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 8.9e-47 191.4 291 46.7
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 8.9e-47 191.4 300 40.0
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 9.8e-46 188.0 330 39.7
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 6.4e-45 185.3 178 57.9
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 4.1e-44 182.6 244 44.3
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 3.9e-42 176.0 275 43.3
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 6.6e-42 175.3 254 47.2
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 1.9e-41 173.7 283 43.8
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 4.3e-41 172.6 282 42.9
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 1.6e-40 170.6 279 41.9
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.8e-40 169.9 185 50.3
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.8e-39 167.2 181 53.0
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 4.0e-39 166.0 276 42.8
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.2e-38 164.5 231 48.5
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 1.2e-38 164.5 231 48.5
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 1.3e-37 161.0 292 39.4
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.7e-37 160.6 278 42.1
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.7e-37 160.6 275 40.7
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 2.9e-37 159.8 278 39.9
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 1.1e-36 157.9 272 41.5
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.9e-36 157.1 279 39.4
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 2.4e-36 156.8 273 43.6
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 5.4e-36 155.6 277 42.2
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 9.2e-36 154.8 176 51.1
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.2e-35 154.5 182 51.6
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.3e-34 151.0 268 40.7
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.7e-34 150.6 176 52.8
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 3.0e-34 149.8 292 37.7
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 8.6e-34 148.3 195 47.2
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 8.6e-34 148.3 184 48.4
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 2.5e-33 146.7 180 54.4
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.1e-31 139.8 208 45.2
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 7.5e-30 135.2 181 48.6
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.4e-28 131.0 287 38.0
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 1.4e-28 131.0 180 49.4
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.2e-27 127.9 286 38.1
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.7e-27 126.7 291 36.1
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 3.5e-27 126.3 204 39.2
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 6.0e-27 125.6 183 46.4
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 1.5e-25 120.9 190 42.6
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 3.3e-25 119.8 190 42.6
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 1.4e-23 114.4 243 39.9
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 1.4e-23 114.4 287 36.2
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.8e-23 114.0 200 41.5
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 4.0e-23 112.8 293 35.8
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.0e-22 110.5 183 38.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 5.8e-22 109.0 268 31.7
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.1e-20 104.8 273 31.9
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.1e-20 104.8 273 31.9
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 1.4e-20 104.4 279 30.8
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.9e-20 104.0 216 38.4
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 1.9e-20 104.0 181 44.8
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 2.4e-20 103.6 274 31.4
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 7.1e-20 102.1 269 31.6
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 9.2e-20 101.7 285 33.3
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.2e-19 101.3 113 54.0
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.1e-19 100.5 214 36.0
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 3.5e-19 99.8 149 41.6
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 1.3e-18 97.8 177 40.7
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 8.7e-18 95.1 111 49.5
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.9e-17 94.0 168 40.5
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 2.5e-17 93.6 186 38.7
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 3.3e-17 93.2 270 31.9
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 3.3e-17 93.2 126 49.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.9e-13 79.3 130 38.5
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.1e-12 78.2 287 32.1
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 1.4e-12 77.8 277 29.2
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 2.4e-12 77.0 185 36.8
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 3.2e-12 76.6 67 55.2
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 5.4e-12 75.9 282 29.8
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 3.9e-10 69.7 238 29.4
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 1.1e-09 68.2 227 34.8
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 1.6e-08 64.3 207 31.4
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 2.1e-08 63.9 227 32.2
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 1.4e-07 61.2 171 35.1
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 4.0e-07 59.7 74 50.0
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 5.8e-06 55.8 50 52.0


User provided reference genes

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