Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.6e-283 978.8 498 100.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.3e-281 971.1 498 99.0
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 4.0e-255 884.4 498 90.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.1e-251 872.1 499 87.0
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.6e-249 863.2 496 86.7
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.0e-246 855.5 503 85.1
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.7e-243 845.1 495 85.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-241 839.7 500 84.2
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-241 838.2 500 84.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.3e-240 836.3 500 84.0
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.3e-240 833.9 500 84.0
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 9.0e-239 830.1 495 84.2
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.6e-238 828.6 496 83.1
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 2.5e-233 812.0 496 82.1
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 3.1e-231 805.1 503 80.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.1e-231 804.7 492 80.7
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 5.0e-229 797.7 501 81.2
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.9e-228 795.8 503 79.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.6e-227 791.6 494 80.6
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 2.3e-226 788.9 490 79.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.6e-225 785.4 493 79.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.4e-225 784.6 492 79.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 4.1e-223 778.1 504 77.8
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-222 776.5 497 76.7
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 2.6e-222 775.4 491 79.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.5e-222 774.6 498 77.5
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 4.5e-222 774.6 495 78.2
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 3.8e-221 771.5 485 77.9
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.5e-220 769.6 495 77.4
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.5e-220 768.8 502 76.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.2e-220 768.1 487 79.7
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 7.2e-220 767.3 496 77.4
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 9.4e-220 766.9 496 79.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.2e-219 766.5 492 77.6
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.6e-219 766.1 490 78.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.6e-219 765.0 487 78.4
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.6e-219 765.0 494 78.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 4.7e-219 764.6 506 77.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.7e-219 764.6 497 77.3
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 6.1e-219 764.2 486 78.6
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-218 762.7 486 78.6
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.3e-218 762.3 487 78.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 5.2e-218 761.1 486 78.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 6.7e-218 760.8 491 76.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.6e-217 758.8 486 78.0
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 3.3e-217 758.4 495 75.8
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.3e-217 758.4 495 75.8
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.4e-217 758.1 505 76.2
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 5.7e-217 757.7 495 76.0
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 9.7e-217 756.9 491 76.8
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.1e-215 753.4 497 74.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.3e-213 746.5 487 77.2
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.7e-213 746.1 501 75.8
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.7e-213 746.1 501 75.8
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.9e-213 745.3 495 76.8
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.5e-213 744.2 496 74.6
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.5e-212 743.0 501 75.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 3.2e-212 741.9 487 76.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 7.2e-212 740.7 484 76.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.1e-211 739.2 494 75.9
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 2.7e-211 738.8 509 73.3
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 8.0e-211 737.3 497 74.6
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-210 736.5 494 75.5
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-210 736.1 496 73.0
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.3e-210 735.7 496 74.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.2e-210 734.6 494 73.7
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 6.8e-210 734.2 496 72.6
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 6.8e-210 734.2 496 72.6
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-209 733.4 496 72.8
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.5e-209 733.0 496 73.8
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.5e-209 733.0 497 74.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.4e-209 731.9 496 73.4
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 3.4e-209 731.9 494 74.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 5.7e-209 731.1 498 74.7
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 5.7e-209 731.1 496 72.6
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.7e-209 731.1 495 74.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.7e-209 731.1 496 73.4
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 5.7e-209 731.1 482 75.9
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 7.5e-209 730.7 531 71.2
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.2e-208 729.2 490 73.5
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 6.3e-208 727.6 488 74.2
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.3e-208 727.6 496 73.8
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 8.3e-208 727.2 494 73.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 8.3e-208 727.2 494 73.3
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-207 726.5 496 72.8
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-207 726.1 486 75.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.4e-207 725.7 507 72.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.4e-207 725.7 495 73.9
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 9.1e-207 723.8 487 74.3
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-206 722.2 492 74.4
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 3.5e-206 721.8 496 72.6
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.5e-205 717.6 490 72.2
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-204 716.8 507 71.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 4.2e-204 714.9 495 72.7
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 5.5e-204 714.5 499 71.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 6.1e-203 711.1 498 73.7
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 6.8e-202 707.6 492 71.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 6.3e-200 701.0 525 69.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.1e-199 698.4 505 69.5
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 7.7e-198 694.1 513 71.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 8.6e-197 690.6 481 73.2
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.3e-196 688.7 456 75.0
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.0e-194 683.7 571 63.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.3e-194 682.6 490 69.0
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 5.2e-194 681.4 494 68.8
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 4.4e-193 678.3 490 71.4
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.3e-192 676.8 490 68.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.2e-191 672.2 584 60.3
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.2e-190 670.2 496 71.0
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.0e-190 669.5 469 73.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 7.8e-190 667.5 524 67.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.1e-188 663.7 494 69.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.3e-188 662.1 492 67.7
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.7e-187 658.3 497 65.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.8e-186 656.4 490 69.0
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.4e-185 652.1 493 66.9
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 4.4e-185 651.7 500 65.4
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 4.4e-185 651.7 490 69.4
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.8e-185 651.4 496 66.9
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.8e-185 651.4 502 68.1
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.7e-184 649.8 486 67.3
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 5.2e-178 628.2 494 66.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.4e-177 625.2 402 77.6
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.9e-175 619.8 492 63.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.8e-171 605.9 509 63.9
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-167 593.2 349 84.8
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-164 583.9 531 57.3
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.9e-162 574.3 402 75.6
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.0e-161 573.2 457 63.2
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.9e-159 566.6 494 59.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 3.2e-159 565.8 381 75.1
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.1e-154 549.3 359 78.3
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 7.1e-151 538.1 394 71.1
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 1.6e-150 537.0 553 55.5
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-148 530.0 362 74.3
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 7.3e-148 528.1 399 67.9
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.0e-141 506.1 366 71.6
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-137 493.4 410 66.6
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 4.2e-135 485.7 369 68.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-133 481.1 280 85.4
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-127 461.1 468 53.0
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.2e-127 459.1 272 83.5
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.9e-125 452.6 310 74.2
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.5e-116 423.3 363 60.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.3e-116 422.9 275 76.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.4e-90 337.8 234 72.6
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.4e-87 325.1 193 82.9
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.0e-84 317.4 253 68.8
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.3e-83 314.7 481 39.1
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-83 314.7 184 84.8
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 4.4e-76 289.7 218 70.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 6.0e-65 252.7 202 65.8
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 6.6e-64 249.2 231 60.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-60 238.4 327 46.8
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.0e-56 225.3 134 82.8
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 8.6e-56 222.2 137 79.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 8.9e-53 212.2 139 76.3
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-51 208.0 153 69.9
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.4e-50 204.1 126 78.6
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.5e-47 194.9 264 49.2
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.5e-47 194.1 114 80.7
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.1e-42 176.0 114 74.6
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.1e-41 174.5 99 81.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.1e-41 174.5 99 81.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.8e-38 164.1 113 71.7
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 7.6e-36 156.0 205 44.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 7.9e-25 119.4 72 80.6
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 3.0e-24 117.5 105 61.0
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 5.1e-24 116.7 69 82.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 8.7e-24 115.9 97 64.9
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 9.6e-23 112.5 63 85.7
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 3.7e-22 110.5 74 73.0
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 8.1e-22 109.4 67 79.1
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.6e-20 104.4 65 86.2
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.8e-19 100.5 65 75.4
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 6.5e-19 99.8 189 39.2
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.2e-18 97.4 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.3e-18 95.9 65 70.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.5e-15 87.8 77 61.0
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.2e-11 74.7 46 69.6
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 5.5e-10 70.1 38 81.6
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 3.9e-08 63.9 48 79.2


User provided reference genes

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