Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 1.8e-201 705.7 343 100.0
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.5e-144 516.5 338 77.2
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 6.2e-138 494.6 347 71.2
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 1.1e-137 493.8 350 72.6
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 2.4e-137 492.7 349 72.5
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 5.3e-137 491.5 339 72.9
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 1.5e-136 490.0 339 72.6
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 3.4e-136 488.8 336 73.5
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 2.1e-133 479.6 339 73.2
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 7.3e-131 471.1 341 69.5
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 2.4e-129 466.1 341 69.2
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 3.1e-129 465.7 345 67.2
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 8.4e-127 457.6 320 69.4
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 1.9e-126 456.4 342 66.4
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 1.9e-126 456.4 343 66.2
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 3.5e-125 452.2 342 66.4
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 4.6e-125 451.8 353 64.0
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 7.9e-125 451.1 341 65.1
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 1.8e-124 449.9 337 64.7
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 3.0e-124 449.1 344 64.5
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 3.0e-124 449.1 346 64.2
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 1.1e-123 447.2 343 65.9
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 4.3e-123 445.3 346 63.6
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 7.4e-123 444.5 343 64.1
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 1.3e-122 443.7 341 63.6
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 1.8e-121 439.9 347 64.8
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 5.3e-121 438.3 338 64.5
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.2e-120 437.2 338 63.0
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 2.6e-120 436.0 338 63.3
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 5.8e-120 434.9 346 63.6
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 3.8e-119 432.2 342 62.3
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 6.4e-119 431.4 340 61.2
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 2.1e-117 426.4 346 61.0
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 3.5e-117 425.6 296 68.9
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 4.6e-117 425.2 318 66.7
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 6.0e-117 424.9 325 63.7
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 1.3e-116 423.7 341 62.2
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.3e-116 423.7 346 61.6
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 1.3e-116 423.7 338 61.8
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 8.7e-116 421.0 360 60.3
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 8.7e-116 421.0 341 61.0
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 1.5e-115 420.2 321 63.6
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 5.6e-115 418.3 354 59.9
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 7.4e-115 417.9 354 58.5
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 9.6e-115 417.5 346 59.8
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 9.6e-115 417.5 346 60.4
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 9.6e-115 417.5 298 66.1
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 2.8e-114 416.0 340 61.2
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 2.8e-114 416.0 343 61.2
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 3.7e-114 415.6 343 59.8
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 1.4e-113 413.7 342 61.4
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 2.4e-113 412.9 356 58.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.3e-113 411.8 311 67.5
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 9.0e-113 411.0 299 64.5
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 2.6e-112 409.5 346 59.0
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 3.4e-112 409.1 346 58.4
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 3.4e-112 409.1 346 60.1
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.4e-112 409.1 341 59.8
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 1.0e-111 407.5 344 59.3
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 2.2e-111 406.4 293 65.2
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 2.9e-111 406.0 316 61.4
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 8.4e-111 404.4 306 61.8
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 2.5e-110 402.9 315 61.3
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 2.5e-110 402.9 291 64.9
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.2e-109 400.6 308 62.3
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 1.6e-109 400.2 308 62.0
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 4.6e-109 398.7 345 58.3
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 1.0e-108 397.5 336 59.5
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 3.9e-108 395.6 341 58.7
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 1.9e-107 393.3 307 63.2
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 1.9e-107 393.3 352 58.2
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 2.5e-107 392.9 344 58.7
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 3.3e-107 392.5 292 64.4
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 4.3e-107 392.1 342 58.5
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 5.7e-107 391.7 344 58.4
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 7.4e-107 391.3 296 62.2
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.6e-106 390.2 335 60.6
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 2.8e-106 389.4 283 69.6
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.8e-106 389.4 294 62.6
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 2.8e-106 389.4 331 58.3
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 2.8e-106 389.4 337 59.9
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 1.8e-105 386.7 343 58.3
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 1.8e-105 386.7 343 58.3
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 3.1e-105 386.0 345 58.3
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.9e-102 376.7 338 57.4
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 4.2e-102 375.6 294 61.2
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 2.7e-101 372.9 320 58.1
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 2.3e-100 369.8 313 60.1
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 2.3e-100 369.8 373 53.9
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 2.0e-99 366.7 282 62.1
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 1.4e-97 360.5 305 56.4
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 5.3e-97 358.6 265 63.0
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 5.0e-95 352.1 215 73.5
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 3.2e-94 349.4 264 62.9
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 4.2e-94 349.0 300 59.0
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 2.3e-92 343.2 241 65.6
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 6.7e-92 341.7 362 51.1
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 7.4e-91 338.2 230 66.5
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 3.6e-85 319.3 347 48.4
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 4.2e-78 295.8 247 62.3
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 1.2e-77 294.3 347 48.7
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.5e-70 270.8 285 46.7
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 1.2e-69 267.7 322 45.0
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 5.2e-68 262.3 377 39.5
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 8.8e-68 261.5 280 45.7
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 5.0e-63 245.7 203 57.6
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.6e-61 239.6 232 56.5
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 6.1e-61 238.8 224 55.8
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 1.7e-58 230.7 251 44.2
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 5.0e-55 219.2 160 67.5
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 1.2e-53 214.5 202 53.0
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 1.0e-52 211.5 314 41.1
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.1e-49 201.4 270 40.0
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 4.1e-49 199.5 307 39.1
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 1.7e-31 141.0 106 57.5
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 3.9e-31 139.8 151 52.3
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 8.1e-29 132.1 160 51.2
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 9.3e-17 92.0 108 47.2
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 5.3e-12 76.3 168 33.9
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 1.1e-09 68.6 95 43.2
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 2.4e-09 67.4 39 74.4
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 6.7e-07 59.3 35 68.6
Lj2g0012465 Lotus japonicus HOM05D006406 ORTHO05D007883 6.7e-07 59.3 40 67.5


User provided reference genes

Program Settings