Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 2.7e-129 465.3 232 100.0
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 1.6e-121 439.5 238 93.3
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 7.0e-93 344.4 239 73.6
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 1.2e-87 327.0 238 71.8
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 2.6e-87 325.9 240 71.7
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 9.2e-85 317.4 240 68.8
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 4.7e-81 305.1 239 67.8
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 1.1e-80 303.9 186 81.2
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 9.8e-79 297.4 193 78.2
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 2.4e-77 292.7 233 63.1
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 3.9e-75 285.4 239 61.5
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.9e-74 283.1 241 61.4
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.9e-74 283.1 241 61.4
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.9e-74 283.1 241 61.4
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 7.3e-74 281.2 241 61.0
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 7.3e-74 281.2 241 61.0
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 9.5e-74 280.8 237 61.6
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 2.8e-73 279.3 239 63.6
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 4.7e-73 278.5 216 63.0
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 6.2e-73 278.1 192 69.8
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 1.8e-72 276.6 236 60.6
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 3.1e-72 275.8 210 65.2
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 3.4e-71 272.3 230 59.1
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 1.3e-70 270.4 199 65.3
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 2.9e-70 269.2 210 62.9
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 4.9e-70 268.5 232 60.3
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 6.4e-70 268.1 202 63.9
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 1.4e-69 266.9 227 60.4
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 2.4e-69 266.2 183 69.4
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 2.4e-69 266.2 210 61.9
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 4.1e-69 265.4 186 70.4
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 4.1e-69 265.4 187 68.4
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 7.1e-69 264.6 228 61.8
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 1.2e-68 263.8 187 67.4
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 2.7e-68 262.7 219 61.6
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.7e-68 262.7 205 64.4
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 3.5e-68 262.3 194 67.0
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 1.0e-67 260.8 223 62.3
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 1.0e-67 260.8 189 66.7
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 3.0e-67 259.2 213 61.0
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 3.9e-67 258.8 185 69.7
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 6.6e-67 258.1 187 66.3
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 1.1e-66 257.3 179 70.9
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 1.5e-66 256.9 226 58.4
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 1.5e-66 256.9 193 66.3
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 1.9e-66 256.5 177 68.9
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 3.3e-66 255.8 183 67.8
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 5.6e-66 255.0 187 67.4
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 7.3e-66 254.6 232 58.2
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 1.2e-65 253.8 226 58.4
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 1.6e-65 253.4 186 66.7
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 1.6e-65 253.4 185 69.7
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 2.8e-65 252.7 218 60.6
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 4.7e-65 251.9 191 64.4
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 6.2e-65 251.5 188 66.0
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 1.1e-64 250.8 191 63.4
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 2.4e-64 249.6 225 57.3
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 4.0e-64 248.8 176 68.8
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 6.8e-64 248.1 183 66.7
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 6.8e-64 248.1 196 63.8
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 6.8e-64 248.1 193 65.3
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 8.9e-64 247.7 214 59.3
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 2.6e-63 246.1 183 65.0
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 4.4e-63 245.4 183 65.6
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 2.2e-62 243.0 184 63.6
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 2.2e-62 243.0 205 59.0
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 2.2e-62 243.0 182 64.3
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 3.8e-62 242.3 187 64.2
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 4.9e-62 241.9 183 63.9
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 6.4e-62 241.5 183 65.0
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 8.4e-62 241.1 185 65.4
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 1.1e-61 240.7 205 58.5
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 1.1e-61 240.7 205 59.0
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 1.4e-61 240.4 183 63.4
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 4.1e-61 238.8 183 63.4
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 5.4e-61 238.4 183 62.3
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 7.8e-60 234.6 211 56.9
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 1.0e-59 234.2 181 66.3
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 6.6e-59 231.5 174 65.5
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 1.5e-58 230.3 176 63.6
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 1.5e-58 230.3 174 64.9
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 4.3e-58 228.8 178 67.4
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 1.1e-56 224.2 180 64.4
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 9.0e-56 221.1 201 59.7
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 4.4e-55 218.8 294 44.6
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 4.4e-55 218.8 188 60.6
Os10g0555200 Oryza sativa ssp. japonica HOM05D006638 ORTHO05D008246 2.5e-50 203.0 181 58.0
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 4.3e-50 202.2 138 68.8
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 7.3e-50 201.4 157 63.1
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 2.4e-48 196.4 192 57.3
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 5.8e-47 191.8 183 55.7
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.2e-46 189.9 157 60.5
Medtr2g064690 Medicago truncatula HOM05D006638 ORTHO05D008246 2.9e-46 189.5 131 73.3
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.7e-44 183.0 221 48.9
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 7.9e-44 181.4 221 48.4
ATR0317G113 Amborella trichopoda HOM05D006638 ORTHO05D008246 1.5e-42 177.2 145 60.0
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 1.9e-42 176.8 121 69.4
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 2.4e-40 169.9 116 69.8
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 4.0e-40 169.1 119 68.9
MBI04_g09497_MAGBIO Magnolia biondii HOM05D006638 ORTHO05D008246 1.5e-39 167.2 185 51.4
Zm00001eb023510 Zea mays HOM05D006638 ORTHO05D008246 1.1e-37 161.0 143 59.4
AagrBONN_evm.TU.Sc2ySwM_228.3890 Anthoceros agrestis HOM05D006638 ORTHO05D008246 2.7e-36 156.4 234 41.5
Mapoly0010s0011 Marchantia polymorpha HOM05D006638 ORTHO05D008246 2.7e-36 156.4 155 50.3
Pp3c1_23680 Physcomitrium patens HOM05D006638 ORTHO05D008246 6.7e-35 151.8 193 45.6
FAN01G0965 Fragaria x ananassa HOM05D006638 ORTHO05D008246 3.3e-34 149.4 98 74.5
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 6.9e-32 141.7 91 71.4
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 4.5e-31 139.0 134 55.2
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 1.4e-29 134.0 109 62.4
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 3.2e-29 132.9 106 59.4
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.7e-28 129.8 134 53.7
SMO340G0150 Selaginella moellendorffii HOM05D006638 ORTHO05D008246 1.1e-24 117.9 129 45.0
Pp3c1_23620 Physcomitrium patens HOM05D006638 ORTHO05D008246 9.0e-24 114.8 147 45.6
CBR_g17705 Chara braunii HOM05D006638 ORTHO05D008246 2.4e-16 90.1 165 36.4
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 8.5e-14 81.6 97 52.6
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 1.1e-10 71.2 70 50.0
Medtr2g064670 Medicago truncatula HOM05D006638 ORTHO05D008246 2.0e-10 70.5 89 50.6
Lsat_1_v5_gn_6_51920 Lactuca sativa HOM05D006638 ORTHO05D008246 2.8e-09 66.6 48 60.4
RcHm_v2.0_Chr1g0349061 Rosa chinensis HOM05D006638 ORTHO05D008246 4.8e-09 65.9 44 65.9
MELO3C033920.2 Cucumis melo HOM05D006638 ORTHO05D008246 4.1e-08 62.8 135 31.9
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 2.2e-06 57.0 85 42.4
SEGI_24864 Sequoiadendron giganteum HOM05D006638 ORTHO05D008246 3.8e-06 56.2 78 39.7


User provided reference genes

Program Settings