Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.0e-179 633.3 311 100.0
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 7.3e-138 494.2 311 80.4
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.1e-137 492.7 309 79.9
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.7e-134 483.0 313 76.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 3.2e-133 478.8 282 82.6
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 8.7e-131 470.7 312 76.0
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.4e-125 453.4 315 76.2
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.7e-124 449.1 315 75.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.5e-114 416.8 265 75.5
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 5.7e-114 414.8 276 71.4
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 1.6e-113 413.3 249 81.1
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 4.8e-113 411.8 276 71.7
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.5e-111 406.8 311 65.0
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.4e-111 405.6 317 63.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 3.4e-111 405.6 276 71.0
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 5.9e-111 404.8 315 63.2
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.7e-110 403.3 247 76.5
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.9e-110 402.5 311 65.9
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.0e-110 401.7 311 64.3
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 5.0e-110 401.7 315 63.2
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.1e-109 400.6 305 65.6
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 4.2e-109 398.7 315 64.1
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 5.5e-109 398.3 292 66.1
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.2e-108 397.1 248 73.8
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.6e-108 396.7 312 65.1
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.1e-108 396.4 283 67.8
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.1e-108 396.4 314 63.4
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 2.7e-108 396.0 320 62.2
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 3.6e-108 395.6 249 74.3
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.6e-108 395.2 311 64.0
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 6.1e-108 394.8 312 63.1
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 7.9e-108 394.4 314 63.1
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.0e-107 394.0 251 73.7
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 1.8e-107 393.3 291 64.6
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.8e-107 393.3 249 75.5
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 6.7e-107 391.3 324 62.0
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.1e-106 390.6 313 63.6
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.0e-106 389.8 311 63.7
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.0e-106 389.8 311 63.7
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 4.3e-106 388.7 250 72.4
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 5.7e-106 388.3 248 73.0
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 5.7e-106 388.3 248 72.6
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 5.7e-106 388.3 292 64.7
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 5.7e-106 388.3 278 66.2
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.7e-105 386.7 255 71.4
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.7e-105 386.7 317 63.7
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 2.2e-105 386.3 249 71.5
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 6.3e-105 384.8 312 61.5
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.2e-105 384.4 245 73.1
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.2e-105 384.4 317 61.5
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 8.2e-105 384.4 315 60.6
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.4e-104 383.6 232 75.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.4e-104 383.6 232 75.9
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.4e-104 383.6 315 60.3
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.8e-104 383.3 255 71.4
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 2.4e-104 382.9 246 71.5
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 9.1e-104 380.9 319 63.3
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.2e-103 380.6 251 78.5
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 3.4e-103 379.0 272 65.4
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 7.7e-103 377.9 258 69.8
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 7.7e-103 377.9 239 72.4
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.2e-102 376.3 232 76.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.8e-102 375.6 247 70.4
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.4e-101 373.6 298 62.1
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.4e-101 370.9 254 70.5
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.4e-101 370.9 254 70.5
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 9.4e-101 370.9 244 73.8
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.1e-100 369.8 294 63.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.1e-100 369.8 264 66.3
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 6.1e-100 368.2 255 65.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 6.1e-100 368.2 257 66.9
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 3.0e-99 365.9 310 60.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 5.1e-99 365.2 268 67.9
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 2.6e-98 362.8 289 61.9
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 5.7e-98 361.7 314 57.3
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 7.4e-98 361.3 295 61.7
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 9.7e-98 360.9 271 62.7
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.8e-96 356.7 230 73.5
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.4e-96 356.3 248 66.9
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 9.1e-96 354.4 255 65.9
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.0e-94 350.9 253 66.0
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.2e-92 344.0 312 56.1
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 2.7e-92 342.8 231 70.6
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.1e-90 337.4 284 59.2
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.5e-90 337.0 313 57.2
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 7.4e-90 334.7 209 75.6
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 6.3e-89 331.6 209 75.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.8e-88 330.1 250 65.2
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 2.0e-87 326.6 248 62.1
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.9e-86 322.8 323 53.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 3.8e-86 322.4 238 63.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.2e-81 306.6 247 62.3
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.6e-79 300.4 314 51.0
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 8.8e-75 284.6 263 56.7
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.6e-74 283.1 246 56.9
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.7e-73 280.4 252 55.6
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 3.8e-70 269.2 254 57.1
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 9.5e-69 264.6 184 64.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.0e-67 261.2 151 76.8
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.0e-67 261.2 174 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.7e-65 252.7 230 54.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.7e-62 243.8 177 66.1
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.6e-60 237.3 264 54.9
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 8.3e-57 224.9 171 63.7
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 3.7e-49 199.5 270 39.6
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 2.7e-47 193.4 137 71.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 8.9e-43 178.3 245 41.2
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 2.7e-39 166.8 159 52.8
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.3e-37 159.8 168 50.0
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.1e-36 157.1 92 82.6
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.1e-36 157.1 128 59.4
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.4e-35 153.7 94 84.0
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 4.3e-29 132.9 119 58.8
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.6e-28 131.0 108 56.5
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.1e-28 130.6 119 57.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 2.0e-26 124.0 66 86.4
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.2e-25 120.6 98 57.1
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.1e-24 118.2 150 40.0
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.2e-23 114.8 161 38.5
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 4.8e-20 102.8 143 40.6
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 3.1e-19 100.1 136 39.7
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.5e-16 89.4 58 72.4
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.9e-13 80.9 202 31.2
arahy.Tifrunner.gnm1.ann1.GWHG3I Arachis hypogaea HOM05D006249 ORTHO05D007643 9.6e-13 78.6 108 51.9
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 124 31.5
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 116 41.4
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 4.9e-09 66.2 65 49.2
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 9.3e-08 62.0 56 55.4
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-07 61.6 96 36.5
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-07 61.6 116 32.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-07 60.8 90 47.8
COL.COLO4_29186 Corchorus olitorius HOM05D001287 ORTHO05D001941 3.5e-07 60.1 209 28.2
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 3.5e-07 60.1 50 60.0
vmacro05882 Vaccinium macrocarpon HOM05D001287 ORTHO05D001226 4.6e-07 59.7 207 28.0
Gohir.A07G227400 Gossypium hirsutum HOM05D001287 ORTHO05D001226 6.0e-07 59.3 209 25.4
FvH4_6g51940 Fragaria vesca HOM05D001287 ORTHO05D001226 1.3e-06 58.2 213 25.4
FAN05G2454 Fragaria x ananassa HOM05D001287 ORTHO05D001226 1.3e-06 58.2 213 25.4
FAN14G5772 Fragaria x ananassa HOM05D001287 ORTHO05D001226 1.3e-06 58.2 213 25.4
Gohir.D07G234500 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.8e-06 57.8 209 24.9
Gorai.001G270100 Gossypium raimondii HOM05D001287 ORTHO05D001226 1.8e-06 57.8 209 24.9
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 2.3e-06 57.4 56 50.0
Dinv15968 Davidia involucrata HOM05D065274 ORTHO05D179967 6.7e-06 55.8 52 55.8
Dinv18228 Davidia involucrata HOM05D065274 ORTHO05D180883 6.7e-06 55.8 52 55.8
Duzib084G0620 Durio zibethinus HOM05D001287 ORTHO05D001226 8.7e-06 55.5 210 26.2
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 8.7e-06 55.5 50 56.0


User provided reference genes

Program Settings