Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 4.9e-260 900.6 445 100.0
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.9e-240 835.5 445 91.2
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 2.1e-239 832.0 445 90.8
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 2.4e-230 802.0 443 87.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 3.1e-230 801.6 445 87.4
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.3e-228 796.2 443 87.6
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 8.4e-220 766.9 445 82.2
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 3.2e-219 765.0 441 82.5
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.5e-216 755.4 445 80.0
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.8e-215 751.9 442 80.1
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 6.2e-215 750.7 447 84.8
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 8.1e-215 750.4 445 79.6
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 3.1e-214 748.4 474 76.6
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 4.0e-214 748.0 445 79.8
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 2.6e-213 745.3 445 80.7
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 6.4e-212 740.7 443 79.5
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 8.4e-212 740.3 445 80.0
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.2e-211 738.0 444 78.2
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 9.3e-211 736.9 443 78.1
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.6e-210 736.1 444 83.1
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.7e-210 735.3 446 77.8
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.8e-209 732.6 445 77.1
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 5.1e-209 731.1 454 77.3
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.1e-208 729.9 441 77.8
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.1e-208 729.9 445 76.9
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 4.3e-208 728.0 441 78.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 4.3e-208 728.0 445 77.8
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.1e-207 725.7 444 78.8
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 2.8e-207 725.3 446 76.5
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 3.7e-207 724.9 445 77.8
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 6.2e-207 724.2 441 78.0
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 8.2e-207 723.8 445 77.8
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.4e-206 723.0 445 77.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 2.4e-206 722.2 445 79.1
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.0e-206 721.5 440 78.2
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.5e-205 719.5 441 76.9
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.0e-205 719.2 439 78.1
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.6e-205 718.8 445 77.1
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.9e-204 715.3 445 77.3
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 2.9e-204 715.3 445 77.1
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.4e-203 713.0 445 75.5
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 2.5e-203 712.2 449 76.8
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 4.2e-203 711.4 440 77.3
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.6e-202 709.5 446 75.8
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 3.5e-202 708.4 443 74.9
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 5.1e-201 704.5 445 74.8
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 6.7e-201 704.1 445 77.3
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.4e-200 700.7 445 74.6
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 7.4e-200 700.7 445 76.6
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 2.2e-199 699.1 448 76.1
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 4.1e-198 694.9 440 73.6
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.2e-197 693.3 441 75.7
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.4e-195 686.4 447 79.4
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.4e-195 686.4 442 75.1
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.9e-195 686.0 466 70.6
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 7.2e-195 684.1 470 72.1
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 9.4e-195 683.7 446 72.9
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.2e-194 683.3 433 73.7
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.2e-194 683.3 447 72.7
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.8e-191 672.2 442 74.2
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 8.2e-191 670.6 451 71.6
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.4e-190 669.8 443 72.0
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 2.4e-190 669.1 442 72.9
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 4.1e-190 668.3 445 71.9
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 4.1e-190 668.3 445 69.9
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.1e-190 668.3 405 77.3
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 7.7e-189 664.1 361 86.4
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 3.2e-187 658.7 422 76.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.2e-187 658.3 448 71.0
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.8e-185 652.9 442 70.8
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.5e-179 632.5 468 69.0
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 7.2e-179 630.9 416 73.8
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.4e-177 626.7 422 73.5
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.4e-174 615.9 411 71.8
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 7.7e-173 610.9 445 68.8
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.9e-172 609.0 451 68.1
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.5e-171 605.9 387 74.9
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 7.2e-171 604.4 387 74.9
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.7e-170 602.4 345 80.3
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 3.0e-169 599.0 435 67.4
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.6e-165 586.6 654 50.2
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 2.2e-164 582.8 383 72.6
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 4.4e-160 568.5 353 77.6
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.8e-151 539.3 444 63.1
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 4.1e-150 535.4 437 59.5
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.6e-149 533.5 354 72.0
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.5e-147 526.9 444 58.6
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 4.3e-147 525.4 285 89.8
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.4e-142 510.4 387 64.9
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 9.2e-142 507.7 499 56.1
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 7.8e-141 504.6 285 87.0
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.3e-140 503.8 450 58.9
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.3e-140 503.1 434 59.9
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 9.5e-139 497.7 285 82.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.8e-137 493.4 444 57.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 3.1e-137 492.7 282 83.7
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 6.8e-137 491.5 445 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 2.6e-136 489.6 444 57.2
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.9e-135 486.1 343 71.1
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 4.6e-133 478.8 382 65.2
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 9.5e-131 471.1 283 79.2
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 5.8e-128 461.8 445 57.1
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.6e-125 453.8 363 57.9
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 3.0e-124 449.5 445 56.6
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.9e-119 432.2 291 72.2
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.7e-116 423.7 441 54.2
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 3.4e-112 409.5 445 52.1
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.7e-111 407.1 449 45.7
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 2.7e-109 399.8 407 53.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.7e-108 397.1 287 66.6
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 5.8e-104 382.1 445 50.1
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 5.4e-102 375.6 213 82.6
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.3e-100 370.2 213 80.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 4.5e-96 355.9 422 49.5
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 2.3e-84 317.0 341 47.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.3e-73 279.3 163 79.1
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.3e-73 279.3 163 79.1
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.0e-72 277.3 152 84.9
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-71 275.0 163 77.9
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 3.2e-62 243.4 187 66.3
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 6.7e-60 235.7 151 73.5
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.6e-56 224.6 127 85.8
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 3.5e-56 223.4 130 80.8
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.8e-49 201.1 124 75.0
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.5e-48 196.4 130 70.8
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.8e-44 184.5 95 89.5
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 6.8e-44 182.6 131 71.8
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 7.5e-43 179.1 272 36.4
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.8e-42 177.2 123 64.2
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 3.8e-39 166.8 105 76.2
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.1e-37 161.0 177 52.0
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 8.3e-34 149.1 112 65.2
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 5.0e-31 139.8 96 65.6
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.8e-28 131.3 83 71.1
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 3.0e-23 114.0 108 53.7
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 8.9e-20 102.4 67 79.1
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 4.4e-19 100.1 68 77.9
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 5.8e-19 99.8 69 75.4
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 3.5e-16 90.5 77 57.1
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.1e-15 86.7 45 86.7
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 3.1e-12 77.4 48 66.7
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 1.1e-09 68.9 31 87.1
Eucgr.L00581 Eucalyptus grandis HOM05D005203 ORTHO05D192196 4.3e-06 57.0 46 65.2


User provided reference genes

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