Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021884 Lotus japonicus HOM05D007559 ORTHO05D009642 2.0e-161 573.2 283 100.0
Ca_07735_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 1.5e-127 460.7 284 81.0
Glyma.09G279300 Glycine max HOM05D007559 ORTHO05D009642 1.7e-123 447.2 284 78.5
Phvul.008G089500 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 1.7e-123 447.2 284 78.5
Phvul.009G202600 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 2.2e-123 446.8 283 78.8
VMungo1383G3445 Vigna mungo HOM05D007559 ORTHO05D009642 6.3e-123 445.3 284 77.8
Medtr7g072070 Medicago truncatula HOM05D007559 ORTHO05D009642 3.1e-122 443.0 286 77.3
TPR.G18675 Trifolium pratense HOM05D007559 ORTHO05D009642 1.6e-121 440.7 285 77.9
Psat3g121880 Pisum sativum HOM05D007559 ORTHO05D009642 2.3e-120 436.8 285 77.2
Lalb_Chr05g0229371 Lupinus albus HOM05D007559 ORTHO05D009642 2.3e-112 410.2 283 71.0
Haze_21112 Corylus avellana HOM05D007559 ORTHO05D009642 9.9e-92 341.7 284 58.8
Cfa017088 Carpinus fangiana HOM05D007559 ORTHO05D009642 2.9e-91 340.1 284 58.5
Eucgr.A00644 Eucalyptus grandis HOM05D007559 ORTHO05D009642 1.7e-83 314.3 278 54.7
Ciclev10013613m.g Citrus clementina HOM05D007559 ORTHO05D009642 3.5e-81 306.6 283 56.5
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.7e-80 304.3 276 57.6
Atru.chr8.2360 Acer truncatum HOM05D007559 ORTHO05D009642 3.0e-80 303.5 284 54.2
Manes.09G114100 Manihot esculenta HOM05D007559 ORTHO05D009642 3.0e-80 303.5 275 55.3
Dinv35437 Davidia involucrata HOM05D007559 ORTHO05D009642 4.7e-78 296.2 268 57.1
Sabra06G0082800 Salix brachista HOM05D007559 ORTHO05D009642 2.4e-77 293.9 283 53.0
Potri.006G106400 Populus trichocarpa HOM05D007559 ORTHO05D009642 6.9e-77 292.4 276 53.6
Prupe.6G287300 Prunus persica HOM05D007559 ORTHO05D009642 4.4e-76 289.7 280 54.6
Thecc.05G003800 Theobroma cacao HOM05D007559 ORTHO05D009642 7.6e-76 288.9 273 52.0
FAN05G3361 Fragaria x ananassa HOM05D007559 ORTHO05D009642 7.1e-74 282.3 278 51.1
Duzib128G0753 Durio zibethinus HOM05D007559 ORTHO05D009642 1.6e-73 281.2 276 50.0
MD12G1182800 Malus domestica HOM05D007559 ORTHO05D009642 1.6e-73 281.2 280 52.1
Sc02g0000710 Simmondsia chinensis HOM05D007559 ORTHO05D009642 2.1e-73 280.8 276 53.6
CANSAT35G1217 Cannabis sativa HOM05D007559 ORTHO05D009642 3.5e-73 280.0 283 52.7
FvH4_6g10340 Fragaria vesca HOM05D007559 ORTHO05D009642 7.8e-73 278.9 276 51.1
FAN09G3233 Fragaria x ananassa HOM05D007559 ORTHO05D009642 1.3e-72 278.1 278 50.0
TWI77G1038 Tripterygium wilfordii HOM05D007559 ORTHO05D009642 1.3e-72 278.1 271 52.0
FAN14G4426 Fragaria x ananassa HOM05D007559 ORTHO05D009642 1.7e-72 277.7 276 50.7
TAR623G1207 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.7e-72 277.7 265 54.3
FAN02G3738 Fragaria x ananassa HOM05D007559 ORTHO05D009642 1.5e-71 274.6 272 51.1
MD04G1169100 Malus domestica HOM05D007559 ORTHO05D009642 3.3e-71 273.5 284 51.1
FAN09G4021 Fragaria x ananassa HOM05D007559 ORTHO05D009642 7.3e-71 272.3 272 51.1
Sed0024504 Sechium edule HOM05D007559 ORTHO05D009642 3.6e-70 270.0 276 50.7
MELO3C031038.2 Cucumis melo HOM05D007559 ORTHO05D009642 4.8e-70 269.6 276 51.1
TAR623G1276 Trochodendron aralioides HOM05D007559 ORTHO05D009642 4.8e-70 269.6 262 53.1
Ah.08g209840 Amaranthus hybridus HOM05D007559 ORTHO05D009642 1.8e-69 267.7 291 50.5
Nn2g13304 Nelumbo nucifera HOM05D007559 ORTHO05D009642 1.8e-69 267.7 279 49.8
COL.COLO4_14426 Corchorus olitorius HOM05D007559 ORTHO05D009642 5.3e-69 266.2 276 48.6
Lsat_1_v5_gn_7_12941 Lactuca sativa HOM05D007559 ORTHO05D009642 2.2e-67 260.8 278 50.4
CsaV3_3G033270 Cucumis sativus L. HOM05D007559 ORTHO05D009642 3.8e-67 260.0 276 48.6
TAR623G0780 Trochodendron aralioides HOM05D007559 ORTHO05D009642 3.2e-66 256.9 241 54.8
QL07p033351 Quercus lobata HOM05D007559 ORTHO05D009642 9.3e-66 255.4 238 52.5
Aqoxy2G02373 Aquilegia oxysepala HOM05D007559 ORTHO05D009642 6.0e-65 252.7 269 49.1
PGSC0003DMG400026609 Solanum tuberosum HOM05D007559 ORTHO05D009642 9.6e-63 245.4 281 48.0
Gohir.A01G230700 Gossypium hirsutum HOM05D007559 ORTHO05D009642 2.8e-62 243.8 279 44.1
Gorai.002G267400 Gossypium raimondii HOM05D007559 ORTHO05D009642 3.1e-61 240.4 279 43.7
CAN.G481.10 Capsicum annuum HOM05D007559 ORTHO05D009642 9.0e-61 238.8 284 46.5
SHI27995 Sapria himalayana HOM05D007559 ORTHO05D009642 3.4e-60 236.9 283 46.3
HanXRQChr12g0363701 Helianthus annuus HOM05D007559 ORTHO05D009642 3.8e-59 233.4 277 45.5
Solyc09g014930.1 Solanum lycopersicum HOM05D007559 ORTHO05D009642 4.9e-59 233.0 281 45.2
AL4G35690 Arabidopsis lyrata HOM05D007559 ORTHO05D009642 3.5e-57 226.9 272 42.6
BcaB02g09190 Brassica carinata HOM05D007559 ORTHO05D009642 3.5e-57 226.9 272 43.0
Sopen09g007840 Solanum pennellii HOM05D007559 ORTHO05D009642 6.0e-57 226.1 274 45.3
MSTRG.5528 Avicennia marina HOM05D007559 ORTHO05D009642 5.1e-56 223.0 276 45.3
Thhalv10017948m.g Eutrema salsugineum HOM05D007559 ORTHO05D009642 6.7e-56 222.6 272 43.0
PSO384G3238 Papaver somniferum HOM05D007559 ORTHO05D009642 6.7e-56 222.6 271 45.8
AT2G38420 Arabidopsis thaliana HOM05D007559 ORTHO05D009642 1.1e-55 221.9 272 41.9
DCAR_028899 Daucus carota HOM05D007559 ORTHO05D009642 3.3e-55 220.3 205 55.1
Sp4g20740 Schrenkiella parvula HOM05D007559 ORTHO05D009642 7.4e-55 219.2 282 41.1
CARHR133080 Cardamine hirsuta HOM05D007559 ORTHO05D009642 1.8e-53 214.5 272 40.4
C04p09160 Brassica napus HOM05D007559 ORTHO05D009642 4.0e-53 213.4 272 41.2
MBI15_g13921_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 4.0e-53 213.4 256 46.9
SGA_v2.0_scaffold85G26664 Striga asiatica HOM05D007559 ORTHO05D009642 9.0e-53 212.2 281 44.8
BolC4t22525H Brassica oleracea HOM05D007559 ORTHO05D009642 2.6e-52 210.7 272 40.4
A05p07630 Brassica napus HOM05D007559 ORTHO05D009642 3.4e-52 210.3 272 39.0
Migut.J00080 Erythranthe guttata HOM05D007559 ORTHO05D009642 1.3e-51 208.4 280 41.8
BraA05t19732Z Brassica rapa HOM05D007559 ORTHO05D009642 2.9e-51 207.2 272 38.2
SalBow6G7175 Salvia bowleyana HOM05D007559 ORTHO05D009642 8.4e-51 205.7 283 42.4
MBI02_g41148_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 1.4e-50 204.9 256 45.3
CDE04G2050 Ceratophyllum demersum HOM05D007559 ORTHO05D009642 1.3e-48 198.4 231 46.8
PSO339G0892 Papaver somniferum HOM05D007559 ORTHO05D009642 3.3e-47 193.7 225 47.1
CANSAT80G0499 Cannabis sativa HOM05D007559 ORTHO05D009642 4.5e-44 183.3 167 55.1
Lj2C64T2 Lonicera japonica HOM05D007559 ORTHO05D009642 5.9e-44 183.0 147 60.5
Glyma.18G209700 Glycine max HOM05D007559 ORTHO05D009642 5.0e-43 179.9 109 80.7
AUR62006326 Chenopodium quinoa HOM05D007559 ORTHO05D009642 3.2e-42 177.2 148 58.1
Aa31LG5G23900 Aethionema arabicum HOM05D007559 ORTHO05D009642 2.1e-41 174.5 282 37.2
EL10Ac7g17033 Beta vulgaris HOM05D007559 ORTHO05D009642 5.7e-39 166.4 148 54.7
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.2e-33 148.7 154 50.6
Actinidia32551 Actinidia chinensis HOM05D007559 ORTHO05D009642 2.7e-33 147.5 149 52.3
Nitab4.5_0003592g0030 Nicotiana tabacum HOM05D007559 ORTHO05D009642 5.0e-27 126.7 140 45.7
Nitab4.5_0000047g0060 Nicotiana tabacum HOM05D007559 ORTHO05D009642 6.5e-27 126.3 140 46.4
Ca_07722_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 4.2e-26 123.6 114 56.1
Ca_07728_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 4.2e-26 123.6 114 56.1
TAR623G0609 Trochodendron aralioides HOM05D007559 ORTHO05D009642 6.3e-22 109.8 109 51.4
MBI15_g43141_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 7.2e-18 96.3 102 49.0
Sabra04G0101500 Salix brachista HOM05D007559 ORTHO05D009642 1.4e-16 92.0 81 56.8
Sabra01G0114900 Salix brachista HOM05D007559 ORTHO05D009642 1.2e-15 89.0 70 61.4
ECA236G1374 Erigeron canadensis HOM05D007559 ORTHO05D009642 5.9e-12 76.6 98 37.8
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 8.5e-11 72.8 157 26.1
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 1.5e-10 72.0 157 28.7
ATR0829G167 Amborella trichopoda HOM05D007559 ORTHO05D009642 3.2e-10 70.9 89 41.6
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 7.2e-10 69.7 157 25.5
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.6e-09 68.6 190 23.7
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 6.1e-09 66.6 184 24.5
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 6.1e-09 66.6 157 26.8
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 8.0e-09 66.2 157 27.4
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 8.0e-09 66.2 190 24.2
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.0e-09 66.2 157 27.4
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 8.0e-09 66.2 157 28.0
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 8.0e-09 66.2 157 26.1
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.0e-08 65.9 157 26.8
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 1.8e-08 65.1 190 23.7
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 1.8e-08 65.1 189 22.8
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 1.8e-08 65.1 157 28.0
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 1.8e-08 65.1 157 26.8
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 1.8e-08 65.1 219 23.3
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 1.8e-08 65.1 219 23.3
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 2.3e-08 64.7 157 25.5
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 2.3e-08 64.7 157 24.2
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 2.3e-08 64.7 157 29.3
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 4.0e-08 63.9 157 28.0
MBI12_g14810_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D006011 4.0e-08 63.9 163 25.8
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 4.0e-08 63.9 157 27.4
PGSC0003DMG400044445 Solanum tuberosum HOM05D007085 ORTHO05D008828 4.0e-08 63.9 154 26.6
PGSC0003DMG402021252 Solanum tuberosum HOM05D007085 ORTHO05D008828 4.0e-08 63.9 154 26.6
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 5.2e-08 63.5 190 23.7
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 6.8e-08 63.2 157 22.3
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 8.8e-08 62.8 157 24.8
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 8.8e-08 62.8 157 24.8
Migut.J01410 Erythranthe guttata HOM05D004271 ORTHO05D006011 8.8e-08 62.8 164 26.8
Medtr2g103550 Medicago truncatula HOM05D000891 ORTHO05D000761 8.8e-08 62.8 217 24.9
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 1.2e-07 62.4 213 23.5
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 1.2e-07 62.4 157 25.5
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 1.5e-07 62.0 157 23.6
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 1.5e-07 62.0 214 27.1
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 2.0e-07 61.6 154 26.6
Hund17105 Selenicereus undatus HOM05D004271 ORTHO05D006011 2.0e-07 61.6 195 24.1
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 2.6e-07 61.2 157 23.6
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 2.6e-07 61.2 156 25.6
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 2.6e-07 61.2 157 26.1
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 2.6e-07 61.2 156 26.3
Glyma.06G227700 Glycine max HOM05D002453 ORTHO05D008746 3.4e-07 60.8 192 29.7
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 3.4e-07 60.8 154 27.3
Duzib052G0775 Durio zibethinus HOM05D004271 ORTHO05D006011 4.4e-07 60.5 204 24.0
SEGI_15100 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 4.4e-07 60.5 190 24.7
CANSAT56G2932 Cannabis sativa HOM05D007085 ORTHO05D008828 5.7e-07 60.1 150 28.7
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 5.7e-07 60.1 143 30.8
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 5.7e-07 60.1 157 26.1
Sabra15G0076800 Salix brachista HOM05D005025 ORTHO05D006499 5.7e-07 60.1 56 51.8
ATR0743G279 Amborella trichopoda HOM05D002453 ORTHO05D008746 7.5e-07 59.7 179 28.5
Peaxi162Scf00573g00042 Petunia axillaris HOM05D007085 ORTHO05D008828 7.5e-07 59.7 161 25.5
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 9.8e-07 59.3 192 28.1
Ca_26205_v3 Cicer arietinum L. HOM05D002453 ORTHO05D008746 9.8e-07 59.3 196 27.6
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 1.3e-06 58.9 157 24.8
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 1.3e-06 58.9 152 30.3
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 1.3e-06 58.9 167 27.5
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 1.7e-06 58.5 157 25.5
GSVIVG01027435001 Vitis vinifera HOM05D004271 ORTHO05D006011 1.7e-06 58.5 197 24.4
CAN.G4458.1 Capsicum annuum HOM05D007085 ORTHO05D008828 2.2e-06 58.2 148 25.0
CAN.G904.26 Capsicum annuum HOM05D007085 ORTHO05D008828 2.2e-06 58.2 148 25.0
CAN.G904.38 Capsicum annuum HOM05D007085 ORTHO05D008828 2.2e-06 58.2 148 25.0
Cfa003738 Carpinus fangiana HOM05D004271 ORTHO05D006011 2.2e-06 58.2 203 26.1
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 2.8e-06 57.8 157 25.5
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 2.8e-06 57.8 157 25.5
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.8e-06 57.8 190 27.9
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 2.8e-06 57.8 162 26.5
Sp3g12850 Schrenkiella parvula HOM05D007085 ORTHO05D008828 3.7e-06 57.4 151 26.5
A05p34840 Brassica napus HOM05D007085 ORTHO05D008828 4.8e-06 57.0 146 26.7
CDE04G0400 Ceratophyllum demersum HOM05D007085 ORTHO05D008828 4.8e-06 57.0 155 21.9
Haze_15730 Corylus avellana HOM05D004271 ORTHO05D006011 4.8e-06 57.0 203 25.6
Nitab4.5_0000923g0040 Nicotiana tabacum HOM05D000021 ORTHO05D008828 4.8e-06 57.0 158 22.8
THA.LOC104811820 Tarenaya hassleriana HOM05D007155 ORTHO05D003034 4.8e-06 57.0 131 30.5
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 6.3e-06 56.6 190 23.2
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 6.3e-06 56.6 195 27.7
PGR044G1707 Punica granatum HOM05D004271 ORTHO05D006011 6.3e-06 56.6 163 23.3
SalBow4G2308 Salvia bowleyana HOM05D002986 ORTHO05D003966 6.3e-06 56.6 135 30.4
Actinidia28087 Actinidia chinensis HOM05D004271 ORTHO05D006011 8.3e-06 56.2 196 23.5
ATR0605G112 Amborella trichopoda HOM05D007085 ORTHO05D008828 8.3e-06 56.2 135 28.1
AL3G26910 Arabidopsis lyrata HOM05D007085 ORTHO05D008828 8.3e-06 56.2 152 26.3
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 8.3e-06 56.2 157 23.6
BolC5t33948H Brassica oleracea HOM05D007085 ORTHO05D008828 8.3e-06 56.2 151 28.5
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 8.3e-06 56.2 189 23.8
Nn7g38347 Nelumbo nucifera HOM05D002453 ORTHO05D002107 8.3e-06 56.2 113 34.5
Nn7g38348 Nelumbo nucifera HOM05D002453 ORTHO05D002107 8.3e-06 56.2 113 34.5


User provided reference genes

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