Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021509 Lotus japonicus HOM05D038930 ORTHO05D236738 1.7e-67 259.2 133 100.0
LjContig00272g0024686 Lotus japonicus HOM05D001692 ORTHO05D005276 8.6e-19 97.4 67 86.6
Lj3g0017062 Lotus japonicus HOM05D038930 ORTHO05D237038 5.4e-13 78.2 50 82.0
Lj2g0002818 Lotus japonicus HOM05D038930 ORTHO05D236593 9.2e-13 77.4 49 79.6
Phvul.005G062700 Phaseolus vulgaris HOM05D001692 ORTHO05D005276 1.7e-11 73.2 72 65.3
VMungo1080G0123 Vigna mungo HOM05D001692 ORTHO05D005276 2.3e-11 72.8 71 69.0
Dinv13329 Davidia involucrata HOM05D001692 ORTHO05D005276 1.5e-10 70.1 64 67.2
Glyma.13G261400 Glycine max HOM05D001692 ORTHO05D005276 1.9e-10 69.7 66 65.2
TPR.G29676 Trifolium pratense HOM05D001692 ORTHO05D005276 2.5e-10 69.3 69 60.9
TAR627G0628 Trochodendron aralioides HOM05D001692 ORTHO05D005276 2.8e-09 65.9 63 61.9
Medtr2g072190 Medicago truncatula HOM05D001692 ORTHO05D005276 4.7e-09 65.1 54 75.9
CSS0018182 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.1e-08 62.4 75 62.7
CSS0026037 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.1e-08 62.4 75 62.7
Psat1g009000 Pisum sativum HOM05D001692 ORTHO05D005276 3.1e-08 62.4 63 63.5
Lalb_Chr01g0016151 Lupinus albus HOM05D001692 ORTHO05D005276 4.0e-08 62.0 62 61.3
Actinidia03648 Actinidia chinensis HOM05D001692 ORTHO05D005276 6.8e-08 61.2 37 89.2
Dinv26682 Davidia involucrata HOM05D001692 ORTHO05D005276 6.8e-08 61.2 37 89.2
RhsimUnG0205800 Rhododendron simsii HOM05D001692 ORTHO05D005276 6.8e-08 61.2 55 67.3
Nitab4.5_0006409g0020 Nicotiana tabacum HOM05D001692 ORTHO05D005276 8.9e-08 60.8 71 59.2
vmacro09424 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 8.9e-08 60.8 53 67.9
Sopen07g030230 Solanum pennellii HOM05D001692 ORTHO05D005276 1.5e-07 60.1 70 60.0
Nitab4.5_0000639g0070 Nicotiana tabacum HOM05D001692 ORTHO05D005276 2.0e-07 59.7 77 55.8
CSS0030572 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.4e-07 58.9 39 82.1
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 3.4e-07 58.9 40 80.0
MBI07_g26365_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 4.4e-07 58.5 66 57.6
Nitab4.5_0005492g0050 Nicotiana tabacum HOM05D001692 ORTHO05D005276 4.4e-07 58.5 72 58.3
CSS0017658 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 5.8e-07 58.2 39 82.1
QL08p044937 Quercus lobata HOM05D001692 ORTHO05D005276 5.8e-07 58.2 69 58.0
Thecc.07G141800 Theobroma cacao HOM05D001692 ORTHO05D005276 5.8e-07 58.2 70 61.4
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea HOM05D001692 ORTHO05D005276 7.5e-07 57.8 79 58.2
Lj3g0022741 Lotus japonicus HOM05D001692 ORTHO05D005276 7.5e-07 57.8 65 60.0
PGR083G0106 Punica granatum HOM05D001692 ORTHO05D005276 7.5e-07 57.8 34 82.4
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea HOM05D001692 ORTHO05D005276 9.8e-07 57.4 79 58.2
Ca_03405_v3 Cicer arietinum L. HOM05D001692 ORTHO05D005276 9.8e-07 57.4 38 84.2
PGSC0003DMG400007053 Solanum tuberosum HOM05D001692 ORTHO05D005276 9.8e-07 57.4 39 79.5
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 1.3e-06 57.0 50 66.0
HanXRQChr10g0305671 Helianthus annuus HOM05D001692 ORTHO05D005276 1.3e-06 57.0 62 54.8
Haze_13535 Corylus avellana HOM05D001692 ORTHO05D005276 1.7e-06 56.6 69 59.4
Cpa.g.sc77.83 Carica papaya HOM05D001692 ORTHO05D005276 2.2e-06 56.2 67 59.7
SalBow1G5551 Salvia bowleyana HOM05D001692 ORTHO05D005276 2.2e-06 56.2 66 54.5
Duzib187G0194 Durio zibethinus HOM05D001692 ORTHO05D005276 2.9e-06 55.8 53 66.0
Migut.M00626 Erythranthe guttata HOM05D001692 ORTHO05D005276 2.9e-06 55.8 33 84.8
Eucgr.F01401 Eucalyptus grandis HOM05D001692 ORTHO05D005276 2.9e-06 55.8 36 80.6
MD17G1135300 Malus domestica HOM05D001692 ORTHO05D005276 2.9e-06 55.8 61 59.0
MSTRG.6728 Avicennia marina HOM05D001692 ORTHO05D005276 3.7e-06 55.5 74 54.1
Solyc07g061960.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 3.7e-06 55.5 70 55.7
Aa31LG10G1670 Aethionema arabicum HOM05D001692 ORTHO05D005276 4.9e-06 55.1 42 76.2
Carub.0001s4279 Capsella rubella HOM05D001692 ORTHO05D005276 4.9e-06 55.1 33 81.8
SalBow8G1908 Salvia bowleyana HOM05D001692 ORTHO05D005276 4.9e-06 55.1 66 53.0
Sp1g40080 Schrenkiella parvula HOM05D001692 ORTHO05D005276 4.9e-06 55.1 36 80.6
BcaC01g01401 Brassica carinata HOM05D001692 ORTHO05D005276 6.4e-06 54.7 44 72.7
C03p91630 Brassica napus HOM05D001692 ORTHO05D005276 6.4e-06 54.7 44 72.7
BolC3t21480H Brassica oleracea HOM05D001692 ORTHO05D005276 6.4e-06 54.7 44 72.7
ECA234G1166 Erigeron canadensis HOM05D001692 ORTHO05D005276 6.4e-06 54.7 34 88.2
Eucgr.L01848 Eucalyptus grandis HOM05D001692 ORTHO05D005276 6.4e-06 54.7 36 80.6
Gohir.A01G044100 Gossypium hirsutum HOM05D001692 ORTHO05D005276 6.4e-06 54.7 36 80.6
Gohir.D01G034901 Gossypium hirsutum HOM05D001692 ORTHO05D005276 6.4e-06 54.7 36 80.6
Gorai.002G043100 Gossypium raimondii HOM05D001692 ORTHO05D005276 6.4e-06 54.7 46 67.4
CDE02G1772 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 8.3e-06 54.3 37 78.4
ClCG11G017000 Citrullus lanatus HOM05D001692 ORTHO05D005276 8.3e-06 54.3 50 60.0
Lsat_1_v5_gn_5_126060 Lactuca sativa HOM05D001692 ORTHO05D005276 8.3e-06 54.3 53 62.3
Nn3g20715 Nelumbo nucifera HOM05D001692 ORTHO05D005276 8.3e-06 54.3 52 63.5
Nitab4.5_0009792g0010 Nicotiana tabacum HOM05D001692 ORTHO05D005276 8.3e-06 54.3 74 54.1
Potri.001G380100 Populus trichocarpa HOM05D001692 ORTHO05D005276 8.3e-06 54.3 59 61.0
THA.LOC104822594 Tarenaya hassleriana HOM05D001692 ORTHO05D005276 8.3e-06 54.3 32 87.5


User provided reference genes

Program Settings