Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 3.7e-168 594.7 291 100.0
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 6.1e-110 401.4 422 54.5
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 4.3e-108 395.2 422 52.4
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 3.7e-107 392.1 422 52.6
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 5.9e-105 384.8 422 51.2
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.9e-104 382.5 422 52.1
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.9e-104 382.5 422 52.1
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 6.5e-104 381.3 421 51.8
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 5.5e-103 378.3 422 52.4
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 7.9e-102 374.4 422 52.1
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 6.7e-101 371.3 420 51.4
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 4.4e-100 368.6 420 51.2
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 5.7e-100 368.2 422 50.2
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 6.1e-78 295.0 418 41.6
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 2.3e-77 293.1 425 42.4
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 4.0e-77 292.4 419 41.8
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 6.8e-77 291.6 419 41.5
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.7e-75 287.0 422 42.4
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 3.7e-75 285.8 418 40.9
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 4.8e-75 285.4 424 41.0
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 1.1e-74 284.3 417 41.0
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 2.4e-74 283.1 424 42.0
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 5.4e-74 282.0 424 41.5
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 7.0e-74 281.6 422 41.2
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 9.1e-74 281.2 429 39.6
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 1.6e-73 280.4 414 41.1
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 4.5e-73 278.9 424 41.5
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 5.9e-73 278.5 419 41.8
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 1.3e-72 277.3 420 41.4
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.3e-72 276.6 422 40.5
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.3e-72 276.6 424 40.6
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.3e-72 276.6 429 39.2
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 2.9e-72 276.2 413 41.9
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 6.6e-72 275.0 424 41.3
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 6.6e-72 275.0 415 40.2
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 8.6e-72 274.6 424 41.0
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 2.5e-71 273.1 415 39.5
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 7.2e-71 271.6 422 39.3
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 7.2e-71 271.6 414 38.6
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.6e-70 270.4 420 40.2
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 1.6e-70 270.4 417 39.6
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 2.1e-70 270.0 398 41.7
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.8e-70 269.6 424 39.9
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 4.7e-70 268.9 425 38.8
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 8.0e-70 268.1 415 39.3
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 1.0e-69 267.7 413 41.2
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 1.0e-69 267.7 425 37.6
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 1.8e-69 266.9 424 39.4
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.8e-69 266.9 415 38.6
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 2.3e-69 266.5 412 40.0
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 4.0e-69 265.8 425 39.3
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 6.8e-69 265.0 417 38.8
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 6.8e-69 265.0 423 39.2
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.8e-69 265.0 424 39.4
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-68 264.2 410 40.0
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.6e-68 263.1 424 39.4
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.6e-68 263.1 424 39.2
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 4.4e-68 262.3 428 39.0
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.2e-67 260.0 425 39.1
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 4.9e-67 258.8 412 37.9
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 6.3e-67 258.5 416 39.2
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 6.3e-67 258.5 415 38.8
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 6.3e-67 258.5 448 37.7
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.1e-66 257.7 414 37.9
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.1e-66 257.7 415 37.1
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 1.8e-66 256.9 404 39.9
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 3.2e-66 256.1 415 38.6
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 3.2e-66 256.1 413 39.7
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 7.0e-66 255.0 422 38.2
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 7.0e-66 255.0 422 38.2
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 9.2e-66 254.6 413 38.0
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 9.2e-66 254.6 416 38.9
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 2.7e-65 253.1 424 38.9
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 3.5e-65 252.7 423 38.1
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 3.5e-65 252.7 423 38.1
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 5.9e-65 251.9 412 38.3
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 3.9e-64 249.2 423 37.4
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 6.6e-64 248.4 416 36.5
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 8.6e-64 248.1 391 39.9
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.1e-63 247.7 423 37.6
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.1e-63 247.7 423 37.4
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.9e-63 246.9 423 37.6
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 2.5e-63 246.5 405 38.5
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 7.3e-63 245.0 406 38.2
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.6e-62 243.8 470 35.3
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 4.7e-62 242.3 420 38.3
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 1.4e-61 240.7 403 39.5
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 8.9e-61 238.0 372 40.6
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.2e-60 237.7 422 37.2
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.5e-60 237.3 415 36.4
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 4.4e-60 235.7 422 37.0
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.7e-59 233.8 165 69.7
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 3.2e-58 229.6 425 36.7
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 5.4e-58 228.8 385 37.1
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 9.2e-58 228.0 391 36.8
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 3.5e-57 226.1 414 35.0
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 6.0e-57 225.3 389 36.5
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 7.8e-57 224.9 391 36.8
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.9e-55 220.3 392 37.0
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.6e-54 217.2 422 35.3
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 3.6e-54 216.1 427 33.3
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 1.1e-53 214.5 418 34.7
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 5.2e-53 212.2 423 35.0
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 7.5e-52 208.4 321 39.3
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 8.6e-48 194.9 163 61.3
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 4.7e-46 189.1 335 36.1
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 3.4e-44 183.0 322 35.4
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.1e-42 177.9 327 36.1
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.3e-40 170.2 160 56.9
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.3e-40 170.2 159 57.9
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 2.4e-37 160.2 158 54.4
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.6e-36 156.8 161 52.8
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.2e-33 147.9 415 30.4
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.3e-32 144.4 422 29.1
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 6.9e-29 132.1 252 36.5
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 7.6e-28 128.6 155 47.1
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 9.9e-28 128.3 211 39.3
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 1.9e-26 124.0 101 63.4
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 5.4e-26 122.5 273 33.0
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 5.1e-24 115.9 105 57.1
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.4e-21 107.8 211 36.0
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 3.5e-17 93.2 71 62.0
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 3.9e-16 89.7 69 55.1
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.5e-15 87.0 106 43.4
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.3e-14 84.7 106 48.1
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.3e-14 84.7 447 22.8
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 2.8e-14 83.6 162 35.2
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.8e-13 80.9 113 45.1
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.0e-13 79.7 113 44.2
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.8e-11 73.2 151 31.8
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.2e-10 70.1 161 32.9
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 4.6e-09 66.2 37 78.4


User provided reference genes

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