Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021159 Lotus japonicus HOM05D000433 ORTHO05D013160 3.2e-124 448.4 218 100.0
Lj1g0020723 Lotus japonicus HOM05D000433 ORTHO05D003991 1.7e-19 100.5 50 90.0
Lj1g0023259 Lotus japonicus HOM05D000433 ORTHO05D003991 1.7e-19 100.5 50 90.0
Lj1g0021560 Lotus japonicus HOM05D000433 ORTHO05D003991 2.4e-18 96.7 50 86.0
TPR.G1382 Trifolium pratense HOM05D000433 ORTHO05D003991 7.0e-18 95.1 50 82.0
Glyma.06G085100 Glycine max HOM05D000433 ORTHO05D003991 2.0e-17 93.6 50 80.0
TPR.G1375 Trifolium pratense HOM05D000433 ORTHO05D003991 1.0e-16 91.3 50 76.0
TPR.G35821 Trifolium pratense HOM05D000433 ORTHO05D003991 1.0e-16 91.3 50 76.0
Medtr3g110195 Medicago truncatula HOM05D000433 ORTHO05D003991 1.7e-16 90.5 50 80.0
MD08G1115100 Malus domestica HOM05D000433 ORTHO05D003991 2.9e-16 89.7 49 77.6
MD08G1115000 Malus domestica HOM05D000433 ORTHO05D003991 6.5e-16 88.6 52 73.1
Ca_15599_v3 Cicer arietinum L. HOM05D000433 ORTHO05D003991 8.5e-16 88.2 50 74.0
Thecc.09G043900 Theobroma cacao HOM05D000433 ORTHO05D003991 8.5e-16 88.2 50 74.0
VMungo1309G2807 Vigna mungo HOM05D000433 ORTHO05D003991 8.5e-16 88.2 50 76.0
Glyma.04G083500 Glycine max HOM05D000433 ORTHO05D003991 1.5e-15 87.4 49 73.5
MD15G1094100 Malus domestica HOM05D000433 ORTHO05D003991 2.5e-15 86.7 50 74.0
COL.COLO4_18651 Corchorus olitorius HOM05D000433 ORTHO05D003991 4.2e-15 85.9 50 72.0
Ciclev10010551m.g Citrus clementina HOM05D000433 ORTHO05D003991 5.5e-15 85.5 49 73.5
MD08G1114800 Malus domestica HOM05D000433 ORTHO05D003991 5.5e-15 85.5 50 72.0
Psat5g021920 Pisum sativum HOM05D000433 ORTHO05D003991 5.5e-15 85.5 50 74.0
Actinidia30273 Actinidia chinensis HOM05D000433 ORTHO05D003991 9.4e-15 84.7 51 70.6
Hma1.2p1_0049F.1_g028710 Hydrangea macrophylla HOM05D000433 ORTHO05D003991 1.2e-14 84.3 51 68.6
Phvul.009G109100 Phaseolus vulgaris HOM05D000433 ORTHO05D003991 1.6e-14 84.0 49 73.5
Psat5g021960 Pisum sativum HOM05D000433 ORTHO05D003991 1.6e-14 84.0 50 72.0
Potri.006G239300 Populus trichocarpa HOM05D000433 ORTHO05D003991 1.6e-14 84.0 49 71.4
Sabra18G0043100 Salix brachista HOM05D000433 ORTHO05D003991 2.1e-14 83.6 49 73.5
Sabra18G0043200 Salix brachista HOM05D000433 ORTHO05D003991 2.1e-14 83.6 49 73.5
Sabra18G0043500 Salix brachista HOM05D000433 ORTHO05D003991 2.1e-14 83.6 49 73.5
TWI34G0984 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 2.1e-14 83.6 51 68.6
TWI34G1621 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 2.1e-14 83.6 50 70.0
GSVIVG01035633001 Vitis vinifera HOM05D000433 ORTHO05D003991 2.1e-14 83.6 48 70.8
Manes.16G076200 Manihot esculenta HOM05D000433 ORTHO05D003991 2.7e-14 83.2 50 72.0
TWI34G1265 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 2.7e-14 83.2 51 66.7
Prupe.1G449100 Prunus persica HOM05D000433 ORTHO05D003991 3.6e-14 82.8 50 70.0
VMungo1309G1574 Vigna mungo HOM05D000433 ORTHO05D003991 3.6e-14 82.8 49 69.4
Sabra18G0043600 Salix brachista HOM05D000433 ORTHO05D003991 4.7e-14 82.4 49 73.5
Sed0013565 Sechium edule HOM05D000433 ORTHO05D003991 6.1e-14 82.0 50 68.0
Thecc.09G044000 Theobroma cacao HOM05D000433 ORTHO05D013160 6.1e-14 82.0 50 66.0
Atru.chr7.2096 Acer truncatum HOM05D000433 ORTHO05D003991 8.0e-14 81.6 49 71.4
Potri.018G043500 Populus trichocarpa HOM05D000433 ORTHO05D003991 1.0e-13 81.3 46 73.9
Gohir.A06G093600 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.8e-13 80.5 50 72.0
Gohir.D06G093300 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.8e-13 80.5 50 72.0
Gorai.010G107700 Gossypium raimondii HOM05D000433 ORTHO05D003991 1.8e-13 80.5 50 72.0
HPP92_006323 Vanilla planifolia HOM05D000433 ORTHO05D003991 2.3e-13 80.1 81 53.1
ClCG00G005190 Citrullus lanatus HOM05D000433 ORTHO05D003991 3.0e-13 79.7 52 67.3
ClCG11G015170 Citrullus lanatus HOM05D000433 ORTHO05D003991 3.0e-13 79.7 52 67.3
Sabra06G0187000 Salix brachista HOM05D000433 ORTHO05D003991 3.0e-13 79.7 49 67.3
PGSC0003DMG400004311 Solanum tuberosum HOM05D000433 ORTHO05D003991 4.0e-13 79.3 50 66.0
FAN20G2606 Fragaria x ananassa HOM05D000433 ORTHO05D003991 5.2e-13 79.0 59 62.7
Potri.006G239402 Populus trichocarpa HOM05D000433 ORTHO05D003991 5.2e-13 79.0 49 67.3
CsaV3_3G048580 Cucumis sativus L. HOM05D000433 ORTHO05D013160 6.7e-13 78.6 50 66.0
FvH4_2g35670 Fragaria vesca HOM05D000433 ORTHO05D003991 6.7e-13 78.6 59 62.7
Dinv14259 Davidia involucrata HOM05D000433 ORTHO05D003991 8.8e-13 78.2 49 67.3
Potri.018G043000 Populus trichocarpa HOM05D000433 ORTHO05D003991 8.8e-13 78.2 46 71.7
Gohir.D05G049100 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.2e-12 77.8 49 65.3
Gorai.009G050300 Gossypium raimondii HOM05D000433 ORTHO05D003991 1.2e-12 77.8 49 65.3
RcHm_v2.0_Chr6g0306131 Rosa chinensis HOM05D000433 ORTHO05D003991 1.2e-12 77.8 60 61.7
Cpa.g.sc522.4 Carica papaya HOM05D000433 ORTHO05D003991 2.0e-12 77.0 49 67.3
Nitab4.5_0009835g0010 Nicotiana tabacum HOM05D000433 ORTHO05D003991 2.0e-12 77.0 50 64.0
PGSC0003DMG400004312 Solanum tuberosum HOM05D000433 ORTHO05D003991 2.0e-12 77.0 50 66.0
Eucgr.C02923 Eucalyptus grandis HOM05D000433 ORTHO05D003991 2.6e-12 76.6 49 65.3
Lj7C703T4 Lonicera japonica HOM05D000433 ORTHO05D003991 2.6e-12 76.6 50 62.0
CANSAT25G0153 Cannabis sativa HOM05D000433 ORTHO05D003991 3.3e-12 76.3 52 67.3
Migut.E01520 Erythranthe guttata HOM05D000433 ORTHO05D003991 3.3e-12 76.3 52 65.4
Gohir.A05G047200 Gossypium hirsutum HOM05D000433 ORTHO05D003991 3.3e-12 76.3 49 63.3
Sopen08g020690 Solanum pennellii HOM05D000433 ORTHO05D003991 3.3e-12 76.3 84 44.0
COL.COLO4_18652 Corchorus olitorius HOM05D000433 ORTHO05D013160 4.4e-12 75.9 50 64.0
Dinv14256 Davidia involucrata HOM05D000433 ORTHO05D003991 4.4e-12 75.9 48 62.5
Duzib168G1402 Durio zibethinus HOM05D000433 ORTHO05D003991 4.4e-12 75.9 50 68.0
FAN15G3649 Fragaria x ananassa HOM05D000433 ORTHO05D003991 4.4e-12 75.9 123 37.4
Potri.018G042650 Populus trichocarpa HOM05D000433 ORTHO05D003991 4.4e-12 75.9 51 64.7
TAR383G1023 Trochodendron aralioides HOM05D000433 ORTHO05D003991 4.4e-12 75.9 48 64.6
MD15G1094300 Malus domestica HOM05D000433 ORTHO05D003991 5.7e-12 75.5 48 58.3
Thecc.09G043800 Theobroma cacao HOM05D000433 ORTHO05D003991 5.7e-12 75.5 80 51.2
Dinv38695 Davidia involucrata HOM05D000433 ORTHO05D003991 7.5e-12 75.1 48 62.5
Peaxi162Scf00227g00007 Petunia axillaris HOM05D000433 ORTHO05D003991 7.5e-12 75.1 49 63.3
Solyc08g066720.3 Solanum lycopersicum HOM05D000433 ORTHO05D003991 7.5e-12 75.1 50 58.0
Sopen11g028910 Solanum pennellii HOM05D000433 ORTHO05D003991 7.5e-12 75.1 49 59.2
Zm00001eb309770 Zea mays HOM05D000433 ORTHO05D003991 7.5e-12 75.1 46 65.2
CAN.G309.89 Capsicum annuum HOM05D000433 ORTHO05D003991 9.7e-12 74.7 48 64.6
Solyc11g071227.1 Solanum lycopersicum HOM05D000433 ORTHO05D003991 9.7e-12 74.7 79 44.3
DCAR_003120 Daucus carota HOM05D000433 ORTHO05D003991 1.7e-11 73.9 49 59.2
DCAR_003121 Daucus carota HOM05D000433 ORTHO05D003991 1.7e-11 73.9 49 65.3
arahy.Tifrunner.gnm1.ann1.I9LXD5 Arachis hypogaea HOM05D000433 ORTHO05D003991 2.2e-11 73.6 51 66.7
Sabra18G0043300 Salix brachista HOM05D000433 ORTHO05D013160 2.2e-11 73.6 56 62.5
CAN.G792.2 Capsicum annuum HOM05D000433 ORTHO05D003991 3.7e-11 72.8 84 42.9
Haze_21881 Corylus avellana HOM05D000433 ORTHO05D003991 3.7e-11 72.8 61 59.0
FvH4_2g35680 Fragaria vesca HOM05D000433 ORTHO05D003991 4.8e-11 72.4 48 58.3
Manes.03G057750 Manihot esculenta HOM05D000433 ORTHO05D003991 6.3e-11 72.0 48 58.3
GSVIVG01035636001 Vitis vinifera HOM05D000433 ORTHO05D003991 6.3e-11 72.0 49 59.2
arahy.Tifrunner.gnm1.ann1.2N484J Arachis hypogaea HOM05D000433 ORTHO05D013160 8.2e-11 71.6 51 66.7
PGR044G1800 Punica granatum HOM05D000433 ORTHO05D003991 8.2e-11 71.6 81 48.1
Migut.E01521 Erythranthe guttata HOM05D000433 ORTHO05D003991 1.1e-10 71.2 51 58.8
Peaxi162Scf00323g00925 Petunia axillaris HOM05D000433 ORTHO05D003991 1.1e-10 71.2 49 59.2
FvH4_2g35682 Fragaria vesca HOM05D000433 ORTHO05D003991 1.4e-10 70.9 48 58.3
Glyma.06G085000 Glycine max HOM05D000433 ORTHO05D003991 1.4e-10 70.9 40 70.0
arahy.Tifrunner.gnm1.ann1.66FUHL Arachis hypogaea HOM05D000433 ORTHO05D003991 1.8e-10 70.5 49 65.3
Eucgr.C00545 Eucalyptus grandis HOM05D000433 ORTHO05D003991 1.8e-10 70.5 48 54.2
MBI04_g27075_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D003991 1.8e-10 70.5 48 58.3
PSO210G3307 Papaver somniferum HOM05D000433 ORTHO05D003991 1.8e-10 70.5 49 65.3
TAR383G0708 Trochodendron aralioides HOM05D000433 ORTHO05D003991 1.8e-10 70.5 48 62.5
HPP92_027883 Vanilla planifolia HOM05D000433 ORTHO05D003991 1.8e-10 70.5 81 48.1
arahy.Tifrunner.gnm1.ann1.35913I Arachis hypogaea HOM05D000433 ORTHO05D013160 4.1e-10 69.3 51 64.7
Atru.chr7.2110 Acer truncatum HOM05D000433 ORTHO05D003991 5.3e-10 68.9 47 57.4
Migut.A00213 Erythranthe guttata HOM05D000433 ORTHO05D003991 5.3e-10 68.9 50 56.0
FAN20G2984 Fragaria x ananassa HOM05D000433 ORTHO05D003991 5.3e-10 68.9 48 60.4
Peaxi162Scf00323g00934 Petunia axillaris HOM05D000433 ORTHO05D003991 5.3e-10 68.9 49 57.1
Atru.chr7.2098 Acer truncatum HOM05D000433 ORTHO05D003991 7.0e-10 68.6 47 57.4
Dinv27895 Davidia involucrata HOM05D000433 ORTHO05D003991 7.0e-10 68.6 46 65.2
Manes.03G057900 Manihot esculenta HOM05D000433 ORTHO05D003991 7.0e-10 68.6 47 66.0
Zm00001eb375850 Zea mays HOM05D000433 ORTHO05D003991 7.0e-10 68.6 48 54.2
FAN08G0103 Fragaria x ananassa HOM05D000433 ORTHO05D003991 9.1e-10 68.2 48 56.2
Oeu057713.1 Olea europaea HOM05D000433 ORTHO05D003991 9.1e-10 68.2 49 57.1
Prupe.1G449300 Prunus persica HOM05D000433 ORTHO05D003991 9.1e-10 68.2 50 54.0
Actinidia30272 Actinidia chinensis HOM05D000433 ORTHO05D003991 1.6e-09 67.4 48 54.2
Cc08_g09430 Coffea canephora HOM05D000433 ORTHO05D003991 1.6e-09 67.4 50 60.0
Os06g0162550 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D003991 1.6e-09 67.4 48 54.2
arahy.Tifrunner.gnm1.ann1.B2GMFE Arachis hypogaea HOM05D000433 ORTHO05D013160 2.0e-09 67.0 51 60.8
arahy.Tifrunner.gnm1.ann1.CEV0UN Arachis hypogaea HOM05D000433 ORTHO05D013160 2.0e-09 67.0 51 60.8
arahy.Tifrunner.gnm1.ann1.V9TV9N Arachis hypogaea HOM05D000433 ORTHO05D013160 2.0e-09 67.0 51 60.8
arahy.Tifrunner.gnm1.ann1.X3TKXF Arachis hypogaea HOM05D000433 ORTHO05D013160 2.0e-09 67.0 51 60.8
CSS0016926 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 2.7e-09 66.6 46 56.5
Lsat_1_v5_gn_3_26320 Lactuca sativa HOM05D000433 ORTHO05D003991 2.7e-09 66.6 46 58.7
Oeu036367.1 Olea europaea HOM05D000433 ORTHO05D003991 2.7e-09 66.6 49 57.1
CSS0012936 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 3.5e-09 66.2 40 70.0
Prupe.1G449200 Prunus persica HOM05D000433 ORTHO05D003991 3.5e-09 66.2 53 49.1
Atru.chr1.3047 Acer truncatum HOM05D000433 ORTHO05D003991 5.9e-09 65.5 47 57.4
Dinv14257 Davidia involucrata HOM05D000433 ORTHO05D003991 5.9e-09 65.5 40 67.5
HanXRQChr13g0401851 Helianthus annuus HOM05D000433 ORTHO05D003991 7.7e-09 65.1 49 57.1
HanXRQChr13g0401881 Helianthus annuus HOM05D000433 ORTHO05D003991 7.7e-09 65.1 49 57.1
ECA246G4238 Erigeron canadensis HOM05D000433 ORTHO05D003991 1.0e-08 64.7 45 57.8
Os08g0371608 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D003991 1.0e-08 64.7 40 62.5
MELO3C003462.2 Cucumis melo HOM05D000433 ORTHO05D003991 1.3e-08 64.3 42 61.9
HanXRQChr17g0538661 Helianthus annuus HOM05D000433 ORTHO05D003991 1.3e-08 64.3 46 56.5
ATR0705G137 Amborella trichopoda HOM05D000433 ORTHO05D003991 1.7e-08 63.9 47 57.4
Haze_16805 Corylus avellana HOM05D000433 ORTHO05D003991 1.7e-08 63.9 52 57.7
Sabra18G0043000 Salix brachista HOM05D000433 ORTHO05D003991 1.7e-08 63.9 40 67.5
CAN.G335.8 Capsicum annuum HOM05D000433 ORTHO05D003991 2.2e-08 63.5 40 62.5
Gohir.D05G049000 Gossypium hirsutum HOM05D000433 ORTHO05D003991 2.9e-08 63.2 41 61.0
ATR0705G056 Amborella trichopoda HOM05D000433 ORTHO05D013160 5.0e-08 62.4 48 52.1
Cfa001732 Carpinus fangiana HOM05D000433 ORTHO05D003991 5.0e-08 62.4 41 65.9
ECA233G3103 Erigeron canadensis HOM05D000433 ORTHO05D003991 5.0e-08 62.4 49 53.1
Eucgr.C02921 Eucalyptus grandis HOM05D000433 ORTHO05D003991 5.0e-08 62.4 40 62.5
GSVIVG01035632001 Vitis vinifera HOM05D000433 ORTHO05D003991 5.0e-08 62.4 51 49.0
FvH4_5g00520 Fragaria vesca HOM05D000433 ORTHO05D003991 8.5e-08 61.6 40 55.0
FAN18G1489 Fragaria x ananassa HOM05D000433 ORTHO05D003991 8.5e-08 61.6 40 55.0
Lsat_1_v5_gn_3_26280 Lactuca sativa HOM05D000433 ORTHO05D003991 1.1e-07 61.2 44 52.3
CSS0045124 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.5e-07 60.8 41 58.5
CSS0015925 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.9e-07 60.5 41 56.1
Cc08_g09420 Coffea canephora HOM05D000433 ORTHO05D003991 1.9e-07 60.5 49 49.0
ECA246G2703 Erigeron canadensis HOM05D000433 ORTHO05D003991 2.5e-07 60.1 41 61.0
FAN13G2375 Fragaria x ananassa HOM05D000433 ORTHO05D003991 2.5e-07 60.1 37 59.5
Oeu057715.1 Olea europaea HOM05D000433 ORTHO05D003991 2.5e-07 60.1 43 62.8
Manes.03G058000 Manihot esculenta HOM05D000433 ORTHO05D003991 3.2e-07 59.7 47 55.3
Peaxi162Scf00227g00018 Petunia axillaris HOM05D000433 ORTHO05D003991 3.2e-07 59.7 50 50.0
ECA246G0302 Erigeron canadensis HOM05D000433 ORTHO05D003991 5.5e-07 58.9 41 58.5
Eucgr.C02920 Eucalyptus grandis HOM05D000433 ORTHO05D003991 9.4e-07 58.2 52 48.1
ATR0705G033 Amborella trichopoda HOM05D000433 ORTHO05D003991 1.2e-06 57.8 39 59.0
Mapoly0012s0198 Marchantia polymorpha HOM05D000433 ORTHO05D003991 2.1e-06 57.0 46 45.7
ATR0705G050 Amborella trichopoda HOM05D000433 ORTHO05D003991 2.7e-06 56.6 39 56.4
Mapoly0012s0197 Marchantia polymorpha HOM05D000433 ORTHO05D003991 3.6e-06 56.2 46 45.7
Eucgr.C02919 Eucalyptus grandis HOM05D000433 ORTHO05D003991 4.7e-06 55.8 51 47.1


User provided reference genes

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