Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 9.2e-153 543.5 270 100.0
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 4.2e-97 358.6 252 74.6
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 6.0e-96 354.8 271 70.1
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 2.2e-90 336.3 254 69.3
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 2.3e-87 326.2 269 66.9
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.9e-86 323.2 242 71.5
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 5.3e-84 315.1 245 68.6
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 7.7e-83 311.2 243 67.9
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 6.5e-82 308.1 238 69.3
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 2.1e-72 276.6 252 60.7
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 5.3e-68 261.9 262 58.0
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 4.5e-67 258.8 267 56.9
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 2.9e-66 256.1 275 53.5
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 2.9e-66 256.1 241 56.8
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 1.1e-65 254.2 264 56.1
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.5e-65 253.1 267 54.7
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.2e-65 252.7 267 55.1
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 9.4e-65 251.1 242 54.5
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 1.6e-64 250.4 272 53.7
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 2.7e-64 249.6 270 53.3
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 2.7e-64 249.6 272 54.0
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 2.7e-64 249.6 221 62.0
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 6.1e-64 248.4 270 53.7
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.0e-63 247.7 258 55.0
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 1.8e-63 246.9 219 62.6
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 5.7e-62 241.9 281 52.3
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 9.7e-62 241.1 254 55.5
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 1.3e-61 240.7 253 54.2
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 6.3e-61 238.4 248 56.9
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 6.3e-61 238.4 274 52.6
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 8.2e-61 238.0 245 58.0
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 3.1e-60 236.1 248 52.0
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.3e-58 230.7 214 59.3
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 1.3e-58 230.7 236 57.6
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 1.9e-57 226.9 243 55.6
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.9e-57 226.9 249 53.4
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 2.5e-57 226.5 246 53.3
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 7.2e-57 224.9 216 59.3
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.0e-55 221.1 211 57.8
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.4e-55 220.7 276 49.6
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 1.8e-55 220.3 214 57.0
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 2.3e-55 219.9 213 59.2
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 1.3e-53 214.2 225 52.0
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 8.3e-53 211.5 212 58.0
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 1.4e-52 210.7 216 54.6
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 2.4e-52 209.9 197 57.9
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 4.1e-52 209.1 215 55.8
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 7.0e-52 208.4 210 54.3
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 3.5e-51 206.1 223 54.3
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 5.9e-51 205.3 215 54.0
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.0e-50 204.5 186 58.1
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 1.0e-50 204.5 239 50.2
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 2.9e-50 203.0 209 54.1
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 8.5e-50 201.4 205 57.6
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 9.4e-49 198.0 259 49.0
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 3.4e-46 189.5 230 48.3
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 4.9e-45 185.7 232 46.6
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 4.9e-45 185.7 211 49.3
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 4.9e-45 185.7 161 62.1
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.8e-44 183.7 255 47.5
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 2.4e-44 183.3 234 47.0
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 5.4e-44 182.2 202 50.5
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 2.7e-43 179.9 242 45.9
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 4.5e-43 179.1 248 44.4
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 7.7e-43 178.3 222 49.1
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.0e-42 177.9 225 48.4
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 1.7e-42 177.2 233 45.9
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 1.7e-42 177.2 233 45.9
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 5.0e-42 175.6 225 48.0
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 4.2e-41 172.6 238 44.5
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 3.6e-40 169.5 244 45.1
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.2e-38 164.5 225 47.6
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 1.3e-37 161.0 159 56.0
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 2.4e-36 156.8 165 53.9
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 2.7e-35 153.3 161 54.0
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 4.6e-35 152.5 184 50.0
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 1.0e-34 151.4 185 49.2
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 5.6e-33 145.6 181 50.3
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 1.3e-29 134.4 225 37.3
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 2.4e-28 130.2 156 46.8
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 1.6e-27 127.5 123 58.5
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 3.3e-25 119.8 167 44.9
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.8e-24 116.7 164 48.2
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 2.8e-24 116.7 126 54.0
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 6.2e-24 115.5 126 53.2
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 8.1e-24 115.2 126 51.6
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 8.1e-24 115.2 259 30.5
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.3e-23 113.6 80 73.8
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 2.6e-22 110.2 87 63.2
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 2.2e-21 107.1 179 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 8.3e-21 105.1 177 36.7
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 1.4e-20 104.4 176 41.5
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 7.1e-20 102.1 89 62.9
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 2.3e-18 97.1 200 34.0
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.9e-18 96.3 71 69.0
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 6.6e-18 95.5 67 73.1
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 8.1e-16 88.6 188 34.6
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.9e-13 80.1 86 53.5
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 3.2e-12 76.6 137 38.0
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.1e-12 76.3 55 69.1
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 7.1e-12 75.5 85 47.1
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 9.2e-12 75.1 111 45.9
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 3.0e-10 70.1 98 38.8
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 3.3e-09 66.6 68 52.9
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 1.6e-08 64.3 77 51.9
Os05g0516300 Oryza sativa ssp. japonica HOM05D007521 ORTHO05D009387 6.8e-07 58.9 126 33.3
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 8.9e-07 58.5 121 29.8
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.4e-06 56.6 74 37.8
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 4.4e-06 56.2 102 32.4
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 7.6e-06 55.5 119 30.3
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 9.9e-06 55.1 82 35.4
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 9.9e-06 55.1 82 36.6


User provided reference genes

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