Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 9.7e-164 580.1 295 100.0
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 4.0e-109 398.7 258 81.8
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 2.0e-108 396.4 246 82.9
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 1.1e-103 380.6 260 75.4
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 5.2e-93 345.1 264 72.0
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 6.8e-93 344.7 261 70.5
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 4.9e-91 338.6 261 70.1
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 8.3e-91 337.8 261 67.4
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 2.1e-89 333.2 260 67.7
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 8.9e-85 317.8 240 67.5
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 3.4e-84 315.8 240 67.1
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 3.4e-84 315.8 245 68.6
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 3.4e-84 315.8 261 65.1
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 3.2e-82 309.3 256 64.5
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 6.0e-81 305.1 261 63.6
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 3.0e-80 302.8 257 63.0
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 8.7e-80 301.2 264 63.6
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 1.1e-79 300.8 257 62.3
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 4.7e-78 295.4 243 63.4
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 6.2e-78 295.0 242 62.8
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 3.1e-77 292.7 236 64.8
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 5.8e-76 288.5 274 56.9
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 4.9e-75 285.4 250 63.6
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 2.4e-74 283.1 245 60.4
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.7e-73 279.6 245 59.6
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.0e-72 277.7 230 61.7
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 2.3e-72 276.6 234 62.0
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 3.0e-72 276.2 234 60.7
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.5e-71 273.9 236 61.0
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.6e-70 269.2 267 55.8
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 6.2e-70 268.5 244 57.8
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 9.0e-69 264.6 233 62.2
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 1.2e-68 264.2 239 60.3
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 1.5e-68 263.8 240 60.4
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 4.5e-68 262.3 258 55.4
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 1.3e-67 260.8 235 59.6
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 2.9e-67 259.6 241 58.1
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 4.9e-67 258.8 238 58.4
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 4.9e-67 258.8 238 58.4
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 1.4e-66 257.3 253 54.9
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 3.2e-66 256.1 247 56.7
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 5.4e-66 255.4 241 55.6
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 7.1e-66 255.0 246 55.3
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 9.3e-66 254.6 245 55.5
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 9.3e-66 254.6 235 57.9
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 9.3e-66 254.6 244 55.7
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 9.3e-66 254.6 248 54.8
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 1.6e-65 253.8 230 60.0
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 2.1e-65 253.4 237 59.1
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 2.7e-65 253.1 257 55.6
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.3e-64 250.8 267 53.6
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 3.9e-64 249.2 249 56.6
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 3.9e-64 249.2 234 59.0
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 1.5e-63 247.3 239 55.2
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 1.9e-63 246.9 239 54.8
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 4.3e-63 245.7 239 54.0
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 5.6e-63 245.4 252 54.8
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 7.4e-63 245.0 254 52.4
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.7e-62 242.7 260 51.9
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 6.2e-62 241.9 234 53.4
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.4e-61 240.7 258 51.9
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 4.0e-61 239.2 248 53.2
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 1.2e-60 237.7 247 51.8
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 3.4e-60 236.1 248 52.4
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 5.8e-60 235.3 246 52.0
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.6e-60 235.0 304 46.1
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 4.9e-59 232.3 263 52.9
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 4.9e-59 232.3 251 52.2
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 1.1e-58 231.1 255 52.5
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 1.4e-58 230.7 256 50.0
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.5e-58 229.9 240 52.9
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 9.3e-58 228.0 241 51.0
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.6e-57 227.3 242 52.9
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 4.6e-57 225.7 238 52.1
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 6.0e-57 225.3 259 50.6
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 1.0e-56 224.6 225 54.7
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 3.9e-56 222.6 234 52.1
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 6.7e-56 221.9 244 50.8
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 8.7e-56 221.5 243 49.4
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.2e-51 206.8 258 48.8
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.2e-44 184.5 183 57.9
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 1.0e-43 181.4 235 47.2
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 6.5e-43 178.7 253 43.1
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 3.6e-41 172.9 150 60.0
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 4.6e-41 172.6 254 45.3
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 6.1e-41 172.2 259 44.0
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.7e-38 164.1 149 59.1
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 4.8e-38 162.5 291 36.8
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 6.3e-38 162.2 149 59.1
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 8.2e-38 161.8 170 54.1
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 3.1e-37 159.8 323 34.7
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 1.2e-36 157.9 338 34.9
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 1.5e-36 157.5 260 40.4
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 8.8e-32 141.7 97 74.2
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 2.2e-30 137.1 208 46.2
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 4.1e-29 132.9 150 50.0
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 2.2e-27 127.1 99 63.6
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 8.5e-27 125.2 246 35.0
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 2.7e-25 120.2 105 60.0
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.6e-20 103.6 154 42.2
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 5.5e-18 95.9 189 34.4
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 7.2e-18 95.5 64 82.8
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 2.3e-16 90.5 118 46.6
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 3.6e-09 66.6 237 25.3
Cpa.g.sc28.27 Carica papaya HOM05D007273 ORTHO05D009230 8.3e-06 55.5 68 47.1


User provided reference genes

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