Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 2.2e-184 649.0 371 100.0
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 9.4e-95 351.3 391 61.4
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 4.5e-89 332.4 380 63.7
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.1e-87 327.8 370 54.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.0e-85 321.2 372 54.8
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.2e-84 317.8 370 57.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 6.6e-80 302.0 370 57.0
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 6.6e-80 302.0 473 50.7
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 2.5e-71 273.5 387 55.0
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 3.0e-56 223.4 474 41.4
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.4e-53 214.5 288 48.6
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.4e-50 202.6 393 43.8
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 7.1e-50 202.2 214 53.7
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 9.2e-50 201.8 400 47.0
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 9.2e-50 201.8 394 40.1
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.1e-49 200.7 394 39.8
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 1.3e-48 198.0 379 39.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 5.1e-48 196.1 374 39.6
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 6.6e-48 195.7 144 76.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.6e-48 195.3 396 39.9
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.2e-46 191.4 373 40.8
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.1e-45 186.8 413 40.9
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-43 181.4 232 47.4
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.7e-43 181.0 232 47.8
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.7e-43 181.0 229 49.3
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 4.9e-43 179.5 237 46.0
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.9e-43 179.5 387 44.7
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-42 178.3 232 47.8
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-42 178.3 232 47.8
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-42 178.3 232 47.8
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.1e-42 178.3 387 39.8
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.4e-42 177.2 378 37.8
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.2e-42 176.4 250 44.8
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 1.6e-41 174.5 174 55.7
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 3.5e-41 173.3 379 36.1
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 4.6e-41 172.9 214 50.9
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 4.6e-41 172.9 226 46.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.0e-41 172.6 232 47.0
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 7.8e-41 172.2 377 38.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.0e-40 171.8 240 45.0
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.0e-40 171.8 213 48.4
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.0e-40 171.8 398 39.4
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.7e-40 171.0 234 44.9
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 5.1e-40 169.5 401 38.4
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 6.6e-40 169.1 394 37.1
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.1e-39 168.3 412 40.0
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.3e-39 166.4 234 42.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 4.3e-39 166.4 370 41.6
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.6e-39 165.2 179 52.5
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 5.3e-37 159.5 377 36.9
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-36 158.3 376 35.9
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.5e-36 157.9 215 44.2
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.0e-36 157.5 294 37.4
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.4e-36 156.4 178 55.1
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 7.6e-36 155.6 211 44.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 9.9e-36 155.2 181 48.6
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.3e-35 154.8 240 42.1
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 2.9e-35 153.7 237 43.0
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 8.4e-35 152.1 215 41.9
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.9e-34 151.0 233 41.2
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 5.4e-34 149.4 378 34.4
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 9.3e-34 148.7 406 36.9
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.1e-33 147.5 253 40.3
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 3.5e-33 146.7 393 35.1
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.9e-33 145.6 233 41.2
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.3e-32 144.1 378 34.1
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 3.0e-32 143.7 126 63.5
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.0e-32 143.7 404 33.4
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 6.6e-32 142.5 384 38.5
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 8.7e-32 142.1 382 34.3
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 8.7e-32 142.1 239 43.9
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 2.5e-31 140.6 386 33.7
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 4.3e-31 139.8 238 41.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 7.3e-31 139.0 442 29.9
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 1.3e-30 138.3 396 33.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.8e-30 137.1 375 31.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 8.1e-30 135.6 389 32.4
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.1e-29 133.7 356 34.6
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.1e-29 133.7 239 36.8
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.0e-29 133.3 251 37.5
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 6.9e-29 132.5 363 33.9
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.5e-28 131.3 384 34.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.5e-28 131.3 392 37.5
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 4.5e-28 129.8 435 30.3
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 7.6e-28 129.0 349 33.0
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.7e-27 127.9 142 54.9
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.2e-27 127.5 360 31.9
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.2e-27 127.5 237 36.7
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 8.4e-27 125.6 252 38.5
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 2.4e-26 124.0 412 32.3
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 3.2e-26 123.6 204 37.3
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 3.2e-26 123.6 375 30.7
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.2e-26 123.2 235 37.9
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 7.1e-26 122.5 245 33.9
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.1e-25 120.9 379 29.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 7.9e-25 119.0 143 44.8
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.8e-24 117.9 401 33.7
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.8e-24 117.9 236 34.7
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 6.7e-24 115.9 203 37.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 8.7e-24 115.5 250 36.4
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.1e-23 115.2 185 37.8
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 5.6e-23 112.8 240 36.2
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.6e-23 112.8 208 34.1
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 7.4e-23 112.5 245 35.9
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 9.6e-23 112.1 210 38.6
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.6e-22 111.3 187 39.0
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.8e-22 110.5 244 32.4
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.1e-21 108.6 175 35.4
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.4e-21 108.2 188 39.9
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.8e-21 107.8 208 34.1
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.1e-21 107.1 187 38.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 4.0e-21 106.7 208 34.1
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 6.9e-21 105.9 178 39.9
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 2.0e-20 104.4 177 35.0
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.5e-20 103.2 189 37.0
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.7e-19 101.3 191 37.7
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.7e-19 101.3 349 29.5
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 4.9e-19 99.8 116 48.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.2e-18 96.7 193 38.9
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 7.1e-18 95.9 198 35.4
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.6e-17 94.7 192 37.0
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.1e-17 94.4 174 37.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 2.7e-17 94.0 110 49.1
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.5e-17 93.6 177 36.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 3.0e-16 90.5 487 25.1
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.9e-16 90.1 193 30.6
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.9e-16 90.1 193 36.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.1e-16 89.7 160 34.4
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.1e-15 88.6 195 32.3
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 1.9e-15 87.8 387 27.9
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 3.3e-15 87.0 227 30.4
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 5.7e-15 86.3 172 29.7
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 7.4e-15 85.9 158 36.7
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 7.4e-15 85.9 200 31.5
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 9.6e-15 85.5 216 31.0
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.6e-14 84.7 207 33.3
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.4e-13 81.6 194 28.4
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.4e-13 81.6 207 32.4
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-13 80.9 207 32.4
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 4.1e-13 80.1 247 29.6
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 4.1e-13 80.1 101 47.5
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 4.1e-13 80.1 151 31.8
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 6.9e-13 79.3 97 40.2
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 7.6e-12 75.9 218 28.9
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.1e-10 72.0 192 26.0
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.9e-10 71.2 214 27.1
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.2e-09 68.6 377 25.5
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.8e-08 64.7 175 25.7
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 2.3e-08 64.3 244 27.9
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.9e-08 63.5 176 26.7
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.5e-07 60.8 379 25.9
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.3e-06 58.5 240 29.6


User provided reference genes

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