Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.4e-295 1018.1 514 100.0
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 2.0e-228 795.8 515 78.4
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.2e-224 782.3 515 76.5
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 3.0e-221 771.9 515 76.3
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 4.7e-214 748.0 515 75.3
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 6.1e-214 747.7 515 75.1
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 5.3e-210 734.6 516 73.3
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.5e-196 689.9 461 76.6
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 4.0e-181 638.6 479 69.9
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.7e-152 543.5 521 56.0
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 2.0e-148 530.0 519 55.5
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 4.4e-148 528.9 519 55.3
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 3.8e-147 525.8 518 56.0
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 5.1e-144 515.4 522 54.2
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 2.1e-142 510.0 519 53.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 4.0e-141 505.8 519 53.6
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.0e-141 505.8 519 54.1
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 1.5e-140 503.8 517 53.0
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.3e-139 500.7 519 51.4
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.8e-139 499.2 483 55.7
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 5.4e-138 495.4 518 51.2
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 5.4e-138 495.4 518 52.1
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.6e-137 493.8 518 51.2
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 2.7e-137 493.0 528 52.7
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.3e-136 490.0 513 53.4
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.0e-136 489.6 518 50.4
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 5.1e-136 488.8 519 53.0
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.1e-135 487.6 527 50.3
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.2e-134 481.9 572 49.1
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.5e-132 475.7 520 50.0
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 7.6e-132 474.9 521 51.1
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 3.8e-131 472.6 603 47.6
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 1.4e-130 470.7 520 51.9
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.6e-129 467.2 523 51.4
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 6.0e-129 465.3 573 46.8
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.1e-127 461.1 526 49.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.9e-127 460.3 531 49.3
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.5e-124 450.7 479 51.1
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 1.0e-123 448.0 519 48.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 1.9e-122 443.7 441 53.5
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 2.5e-122 443.4 522 48.9
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 4.2e-122 442.6 523 48.2
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.2e-121 441.0 521 50.7
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 4.6e-121 439.1 403 59.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.6e-121 439.1 486 49.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 6.1e-121 438.7 520 48.5
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.9e-120 436.0 522 46.4
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 1.9e-119 433.7 519 46.8
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 4.3e-119 432.6 523 46.8
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 8.2e-118 428.3 518 45.4
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 4.1e-117 426.0 518 47.1
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 4.1e-117 426.0 438 50.5
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.0e-117 424.9 522 46.0
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.2e-115 420.2 444 50.9
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 8.5e-115 418.3 520 47.5
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 3.2e-114 416.4 445 51.0
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 7.2e-114 415.2 527 45.0
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 4.6e-113 412.5 523 45.3
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 3.9e-112 409.5 451 51.2
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 5.1e-112 409.1 497 47.3
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 8.8e-112 408.3 498 47.6
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 8.8e-112 408.3 441 50.1
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 1.5e-111 407.5 478 48.1
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 3.7e-110 402.9 440 49.8
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 6.3e-110 402.1 530 43.0
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 6.3e-110 402.1 526 44.3
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.4e-109 401.0 446 50.4
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 2.4e-109 400.2 522 43.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.1e-109 399.8 451 50.1
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 5.3e-109 399.1 452 50.7
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.3e-109 399.1 448 49.8
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 6.9e-109 398.7 448 50.9
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 6.9e-109 398.7 446 50.2
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 9.1e-109 398.3 446 50.2
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 9.1e-109 398.3 520 45.4
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.6e-108 396.7 446 50.2
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.6e-108 396.7 448 50.4
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 3.4e-108 396.4 449 49.2
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 5.9e-108 395.6 451 50.3
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 5.9e-108 395.6 451 50.3
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.0e-107 394.8 446 48.9
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.0e-107 394.8 518 45.6
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 5.0e-107 392.5 442 49.1
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 5.0e-107 392.5 549 43.5
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 4.2e-106 389.4 456 47.8
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 7.9e-105 385.2 516 44.8
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 6.7e-104 382.1 502 44.0
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 5.7e-103 379.0 521 43.6
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 4.1e-101 372.9 523 43.6
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 7.0e-101 372.1 522 40.8
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 2.2e-99 367.1 529 41.8
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.5e-98 364.4 266 71.1
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 6.1e-97 359.0 353 53.5
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.2e-89 334.7 373 49.6
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 4.0e-88 329.7 306 59.2
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.5e-87 327.8 380 45.8
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.1e-85 320.1 307 55.4
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 7.0e-85 318.9 477 41.3
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.0e-83 315.1 448 43.1
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.4e-79 299.7 443 40.6
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.1e-77 295.0 190 80.5
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.4e-69 267.3 372 41.7
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 7.0e-69 265.8 488 36.7
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.7e-67 261.2 209 64.6
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.5e-60 236.9 142 83.1
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 9.8e-55 218.8 439 34.6
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 1.1e-53 215.3 339 39.2
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.6e-52 211.5 307 41.7
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.6e-52 211.5 306 41.8
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 3.6e-49 200.3 473 30.7
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 3.1e-48 197.2 536 30.4
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.9e-48 195.7 268 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.3e-46 191.8 454 32.8
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 4.6e-44 183.3 436 31.2
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.3e-43 181.0 307 36.8
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.4e-40 171.8 237 42.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 1.6e-33 148.3 141 51.1
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.8e-33 146.7 125 63.2
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 2.8e-25 120.9 119 54.6
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.8e-25 120.9 136 45.6
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 4.3e-18 97.1 145 41.4
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.3e-14 85.5 76 52.6
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.7e-14 85.1 109 45.0
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 6.5e-14 83.2 193 31.1
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.3e-13 79.3 116 35.3
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.5e-12 77.4 98 38.8
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 3.4e-07 60.8 57 54.4
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 1.0e-06 59.3 65 43.1
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.3e-06 58.9 162 30.9
Haze_05914 Corylus avellana HOM05D006020 ORTHO05D007665 8.5e-06 56.2 103 35.9


User provided reference genes

Program Settings