Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 4858.1 2484 100.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 4276.1 2497 88.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 4271.8 2497 88.1
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 4247.6 2491 87.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 4219.5 2490 87.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 4193.7 2486 86.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 4171.3 2496 86.0
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 4141.3 2515 85.2
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 4050.7 2501 84.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3912.1 2223 89.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3726.4 2547 75.7
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3699.1 2543 75.4
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3692.5 2537 75.3
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3691.0 2531 74.9
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3682.9 2531 75.4
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3673.6 2531 75.1
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3654.8 2556 74.3
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3648.2 2536 74.6
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3646.3 2541 74.7
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3644.7 2572 73.9
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3637.8 2541 74.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3615.9 2549 73.6
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3614.7 2530 74.0
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3597.7 2510 74.3
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3593.9 2557 73.4
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3593.5 2543 73.6
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3559.2 2548 72.4
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3536.9 2539 72.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3536.5 2551 71.9
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3533.4 2503 72.6
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3533.4 2577 71.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3469.1 2606 70.4
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3463.7 2536 70.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3419.8 2536 70.3
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3404.0 2544 69.7
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3401.3 2513 70.4
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3378.2 2832 64.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3358.5 2538 68.8
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3323.9 2512 68.6
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3311.2 2534 68.0
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3308.5 2545 68.1
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3278.4 2510 67.9
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3273.4 2549 67.5
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3226.0 2513 67.0
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3225.6 2513 67.0
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3221.0 2556 66.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3220.3 2523 67.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3219.5 2555 66.5
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3212.6 2519 67.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3202.1 2352 70.5
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3199.5 2585 66.0
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3189.1 2525 66.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3184.4 2561 65.9
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3170.6 2519 66.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3138.2 2501 65.9
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3136.7 2503 65.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3130.9 2513 65.0
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3125.9 2535 65.1
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3119.7 2534 65.1
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3086.6 2546 64.1
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3081.2 2407 67.4
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 3078.5 1722 90.9
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3071.6 2523 65.2
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3051.2 2554 63.9
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3043.1 2518 64.4
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3041.5 2086 75.3
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3022.6 2514 64.1
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2975.7 2234 69.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2933.7 1887 79.4
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2920.6 2573 62.1
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2838.9 1871 77.5
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2810.8 2035 71.5
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2605.5 1642 80.6
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2444.8 1827 70.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2386.3 2270 56.7
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2244.5 1775 67.0
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2237.6 1724 68.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2232.6 1736 68.6
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2133.2 2689 46.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2070.0 2770 44.4
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2043.5 1691 63.5
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1709.9 1177 75.0
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1709.9 2532 42.2
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1705.3 1187 73.4
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1691.4 1145 76.4
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1685.6 1098 79.6
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1673.7 1422 64.4
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1556.2 1152 71.3
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1548.5 1143 71.4
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1531.9 2779 37.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1459.1 2653 36.8
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1451.4 1477 54.5
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1448.7 1597 51.2
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1426.4 854 84.1
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1404.8 1187 63.2
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1358.2 1175 62.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1290.0 1460 50.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1252.3 744 84.1
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1241.9 900 69.4
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.6e-306 1055.4 672 79.5
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.1e-296 1023.8 609 85.7
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.2e-283 981.5 1107 50.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 9.6e-273 945.3 994 54.1
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 2.1e-267 927.5 623 76.9
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 5.9e-254 882.9 1047 49.8
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 4.2e-252 876.7 908 54.7
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.1e-223 780.4 874 50.8
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 7.7e-214 749.6 733 58.0
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 4.4e-201 707.2 496 72.8
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.1e-196 692.6 843 50.4
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.8e-195 688.0 825 46.5
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 4.1e-183 647.5 673 53.6
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.0e-181 641.3 637 53.8
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.1e-181 640.6 652 53.8
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.6e-180 637.1 383 81.7
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.0e-177 628.6 613 60.2
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 5.1e-165 587.4 489 61.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 9.0e-162 576.6 491 62.1
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.1e-146 526.6 501 58.3
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.1e-146 526.6 393 67.9
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.3e-131 476.5 481 53.0
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.4e-125 456.4 516 48.1
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 4.1e-114 418.3 264 76.5
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.2e-105 390.2 239 84.1
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.7e-92 344.7 180 92.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 7.5e-92 344.4 347 54.5
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.2e-91 342.8 204 85.3
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 5.6e-87 328.2 229 70.7
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.1e-85 322.4 219 74.4
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 2.2e-83 316.2 207 76.8
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.9e-83 315.1 180 83.3
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.9e-75 289.3 151 94.7
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 6.6e-72 278.1 158 82.9
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-69 270.8 316 50.0
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.7e-67 263.5 354 45.8
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 4.2e-58 232.3 1935 24.1
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 9.3e-58 231.1 279 48.0
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 6.0e-57 228.4 276 46.7
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-56 227.3 337 41.5
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 7.6e-52 211.5 303 40.9
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 2.7e-49 203.0 279 45.2
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 7.4e-47 194.9 251 45.0
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.6e-38 167.2 116 75.0
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 6.2e-38 165.2 105 77.1
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.1e-37 164.5 116 76.7
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 9.7e-31 141.4 137 56.2
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.8e-30 139.0 143 51.0
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.1e-26 127.9 142 48.6
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.4e-26 127.5 101 69.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.4e-26 127.5 101 69.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 7.9e-25 121.7 100 64.0
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.8e-24 120.6 204 42.6
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 8.8e-24 118.2 183 46.4
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.3e-21 109.0 129 54.3
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.2e-20 107.8 120 48.3
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 4.5e-20 105.9 120 50.0
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.9e-18 100.5 89 58.4
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.5e-18 100.1 93 64.5
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.3e-16 93.6 143 48.3
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 2.0e-15 90.5 81 56.8
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 3.3e-15 89.7 51 88.2
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 9.7e-15 88.2 67 67.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 9.7e-15 88.2 67 67.2
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 2.2e-14 87.0 47 89.4
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.4e-13 84.3 155 38.7
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.8e-13 84.0 75 61.3
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 4.1e-13 82.8 94 46.8
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.2e-12 81.3 141 43.3
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.7e-11 77.4 69 66.7
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 5.0e-11 75.9 48 77.1
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.5e-11 75.5 79 62.0
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 8.5e-11 75.1 153 40.5
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.5e-10 73.6 57 64.9
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 3.2e-10 73.2 101 49.5
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.2e-09 71.2 59 59.3
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 6.1e-09 68.9 54 64.8
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.7e-08 65.5 70 52.9
TPR.G12448 Trifolium pratense HOM05D004019 ORTHO05D412466 2.2e-06 60.5 149 36.9


User provided reference genes

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