Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.8e-66 255.8 129 100.0
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 3.3e-60 235.0 129 89.1
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 9.7e-60 233.4 129 89.1
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.3e-59 233.0 129 89.1
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 4.8e-59 231.1 129 87.6
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 5.3e-58 227.6 130 88.5
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 2.2e-56 222.2 119 90.8
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 2.9e-56 221.9 129 84.5
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 84.5
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 84.5
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 85.3
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 82.9
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 83.7
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 82.9
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 82.9
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 3.6e-54 214.9 127 83.5
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 84.5
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 84.5
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 7.9e-54 213.8 128 80.5
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 82.9
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 83.7
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 82.2
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 83.7
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 5.2e-53 211.1 127 81.9
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 81.4
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 6.7e-53 210.7 128 78.9
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 8.8e-53 210.3 129 82.2
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 1.1e-52 209.9 127 81.9
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 1.1e-52 209.9 128 80.5
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 81.4
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 80.6
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 3.3e-52 208.4 123 79.7
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 80.6
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 79.8
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 79.8
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.3e-51 206.5 129 79.8
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.7e-51 206.1 129 78.3
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 80.6
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 78.3
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 77.5
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 4.8e-51 204.5 122 84.4
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 78.3
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 6.3e-51 204.1 127 78.7
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 8.2e-51 203.8 129 79.8
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 8.2e-51 203.8 124 82.3
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 8.2e-51 203.8 129 80.6
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 8.2e-51 203.8 129 79.1
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 80.6
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 80.6
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 80.6
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 79.1
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 77.5
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 80.3
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.4e-50 203.0 120 84.2
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.8e-50 202.6 129 76.7
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 83.2
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 3.1e-50 201.8 127 80.3
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 4.1e-50 201.4 129 76.0
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 79.5
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 129 76.7
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 4.1e-50 201.4 129 76.7
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 129 77.5
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 84.9
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 9.1e-50 200.3 119 81.5
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 9.1e-50 200.3 129 76.0
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.2e-49 199.9 127 78.7
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.2e-49 199.9 121 81.8
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.6e-49 199.5 129 74.4
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.0e-49 199.1 127 79.5
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 2.6e-49 198.7 129 76.0
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 82.4
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 81.5
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.5e-49 198.4 129 76.0
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 5.9e-49 197.6 122 79.5
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 82.4
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 79.0
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 7.7e-49 197.2 127 75.6
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 7.7e-49 197.2 129 74.4
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 79.8
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.7e-48 196.1 119 79.8
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 2.2e-48 195.7 127 78.0
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 5.0e-48 194.5 129 74.4
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 5.0e-48 194.5 129 74.4
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 5.0e-48 194.5 129 74.4
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.1e-47 193.4 129 72.9
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.5e-47 193.0 129 74.4
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.9e-47 192.6 127 75.6
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.9e-47 192.6 119 79.8
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.2e-47 191.8 129 73.6
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 5.5e-47 191.0 119 79.0
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 76.5
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 6.1e-46 187.6 121 78.5
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 6.1e-46 187.6 121 78.5
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 8.0e-46 187.2 119 77.3
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 1.8e-45 186.0 119 75.6
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 5.2e-45 184.5 119 74.8
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 6.7e-45 184.1 127 70.1
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 6.7e-45 184.1 119 74.8
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 1.5e-44 183.0 119 73.9
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.0e-44 182.6 119 74.8
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 4.4e-44 181.4 113 79.6
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.7e-43 178.3 129 68.2
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 4.8e-43 177.9 127 69.3
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 6.3e-43 177.6 128 67.2
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.4e-42 176.4 119 72.3
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.4e-42 176.4 146 62.3
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.4e-42 176.4 117 72.6
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.4e-42 175.6 107 80.4
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.4e-42 175.6 128 70.3
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 7.0e-42 174.1 119 73.1
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 9.1e-42 173.7 105 81.0
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 7.7e-41 170.6 119 68.1
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.9e-40 168.7 130 66.9
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 2.9e-40 168.7 119 70.6
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.8e-40 168.3 122 67.2
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.8e-40 168.3 107 77.6
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.5e-39 165.6 121 67.8
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.2e-38 163.3 133 68.4
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.0e-37 160.2 119 66.4
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.3e-37 159.1 129 64.3
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 6.8e-37 157.5 96 80.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-36 156.0 109 73.4
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-36 154.5 95 78.9
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-36 154.5 96 79.2
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.2e-33 146.7 143 53.1
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.9e-32 142.1 129 57.4
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 4.2e-31 138.3 97 69.1
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 5.5e-31 137.9 141 51.1
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.4e-29 133.3 100 65.0
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 3.0e-29 132.1 113 54.9
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.4e-28 128.6 85 75.3
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 5.4e-26 121.3 119 50.4
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.8e-24 115.2 92 64.1
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 8.6e-24 114.0 113 48.7
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.3e-15 85.5 46 87.0
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.4e-10 69.3 39 82.1
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.7e-08 63.2 39 82.1
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 9.5e-07 57.4 31 83.9
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 2.1e-06 56.2 66 39.4


User provided reference genes

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