Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 4.4e-40 167.9 113 100.0
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.9e-28 128.6 113 66.4
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 2.1e-26 122.5 115 62.6
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.0e-24 115.9 113 64.6
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.4e-24 115.2 113 58.4
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.3e-23 113.2 113 57.5
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.7e-23 112.8 114 59.6
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.7e-23 112.8 113 57.5
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 2.2e-23 112.5 113 58.4
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 1.1e-22 110.2 113 55.8
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.1e-22 110.2 113 57.5
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 5.4e-22 107.8 114 56.1
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 2.7e-21 105.5 113 56.6
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 7.8e-21 104.0 113 61.9
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 4.3e-19 98.2 114 55.3
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 9.5e-19 97.1 114 54.4
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.4e-17 93.2 113 52.2
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 4.0e-17 91.7 114 50.0
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 5.2e-17 91.3 113 47.8
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 5.2e-17 91.3 112 48.2
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 4.4e-16 88.2 115 52.2
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 9.8e-16 87.0 104 48.1
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.7e-15 86.3 109 47.7
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 2.9e-15 85.5 111 46.8
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 2.9e-15 85.5 104 50.0
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 3.7e-15 85.1 110 52.7
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.7e-15 85.1 111 46.8
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 6.4e-15 84.3 94 53.2
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 8.3e-15 84.0 106 50.9
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 1.1e-14 83.6 104 48.1
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 1.4e-14 83.2 105 45.7
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 2.4e-14 82.4 112 51.8
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.4e-14 82.4 95 53.7
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 5.4e-14 81.3 113 49.6
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 7.0e-14 80.9 113 46.0
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 7.0e-14 80.9 100 48.0
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 9.2e-14 80.5 110 41.8
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 3.5e-13 78.6 111 47.7
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 4.6e-13 78.2 106 44.3
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 6.0e-13 77.8 112 62.5
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.3e-12 76.6 113 45.1
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.3e-12 76.6 109 44.0
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 2.3e-12 75.9 110 41.8
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 2.3e-12 75.9 110 41.8
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 2.3e-12 75.9 100 43.0
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 3.0e-12 75.5 111 45.9
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 3.0e-12 75.5 111 45.9
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 3.9e-12 75.1 105 43.8
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 5.0e-12 74.7 111 45.9
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 5.0e-12 74.7 111 45.9
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 6.6e-12 74.3 100 46.0
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 8.6e-12 73.9 113 44.2
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 8.6e-12 73.9 104 43.3
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 8.6e-12 73.9 104 43.3
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.5e-11 73.2 104 43.3
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.9e-11 72.8 111 44.1
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.9e-11 72.8 110 40.0
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 2.5e-11 72.4 107 43.9
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 3.3e-11 72.0 111 38.7
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 3.3e-11 72.0 110 40.0
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 3.3e-11 72.0 111 39.6
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 3.3e-11 72.0 111 39.6
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 3.3e-11 72.0 111 39.6
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 3.3e-11 72.0 111 40.5
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 4.3e-11 71.6 111 45.9
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 4.3e-11 71.6 108 39.8
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 5.6e-11 71.2 102 44.1
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 5.6e-11 71.2 111 50.5
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 7.3e-11 70.9 111 42.3
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.2e-10 70.1 111 39.6
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 2.1e-10 69.3 101 58.4
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.1e-10 69.3 110 41.8
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.1e-10 69.3 111 36.9
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 2.1e-10 69.3 106 41.5
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.8e-10 68.9 106 41.5
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 3.6e-10 68.6 104 42.3
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 4.7e-10 68.2 112 55.4
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 4.7e-10 68.2 101 44.6
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 8.1e-10 67.4 102 59.8
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.1e-09 67.0 78 50.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.4e-09 66.6 107 39.3
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 8.9e-09 63.9 48 70.8
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.0e-08 62.8 106 40.6
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 2.0e-08 62.8 111 52.3
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 2.0e-08 62.8 101 42.6
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-08 60.8 109 43.1
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 9.9e-08 60.5 107 38.3
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.2e-07 59.3 103 42.7
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 2.9e-07 58.9 104 37.5
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 3.7e-07 58.5 96 38.5
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 1.9e-06 56.2 89 41.6
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.9e-06 56.2 102 32.4
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 5.4e-06 54.7 104 53.8


User provided reference genes

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