Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 3.9e-171 604.7 314 100.0
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 4.5e-127 458.4 316 77.2
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 2.1e-124 449.5 314 77.4
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 9.7e-122 440.7 317 76.3
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 5.7e-106 388.3 317 68.8
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 5.4e-104 381.7 332 64.5
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 5.7e-98 361.7 280 72.1
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 3.9e-94 349.0 317 63.4
Lalb_Chr25g0287781 Lupinus albus HOM05D007071 ORTHO05D008677 2.2e-89 333.2 316 62.3
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 5.6e-85 318.5 317 59.9
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 5.6e-85 318.5 319 58.3
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 2.1e-84 316.6 315 59.7
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 7.5e-82 308.1 328 55.5
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 1.3e-81 307.4 319 59.6
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 1.1e-80 304.3 319 56.7
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 4.1e-80 302.4 321 53.0
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 3.0e-78 296.2 322 53.4
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 8.6e-78 294.7 326 54.6
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 2.5e-77 293.1 327 54.1
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 7.3e-77 291.6 322 54.7
Gohir.D09G127800 Gossypium hirsutum HOM05D007071 ORTHO05D008677 9.5e-77 291.2 321 54.8
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 9.5e-77 291.2 315 54.9
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 1.6e-76 290.4 318 54.1
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 4.7e-76 288.9 324 52.2
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 6.2e-76 288.5 315 54.0
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 8.1e-76 288.1 321 56.1
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 1.1e-75 287.7 319 52.4
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 4.0e-75 285.8 324 51.5
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 6.8e-75 285.0 325 53.2
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 1.2e-74 284.3 370 46.5
Sed0020351 Sechium edule HOM05D007071 ORTHO05D008677 2.0e-74 283.5 315 51.1
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 4.4e-74 282.3 315 53.3
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 1.3e-73 280.8 313 50.8
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 6.4e-73 278.5 334 51.8
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 7.8e-71 271.6 341 50.4
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 1.0e-70 271.2 311 51.1
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 3.9e-70 269.2 317 49.2
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 1.9e-69 266.9 317 47.9
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 2.5e-69 266.5 329 48.6
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 9.6e-69 264.6 329 48.0
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 2.1e-68 263.5 312 50.3
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 2.1e-68 263.5 314 51.0
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 3.6e-68 262.7 314 47.8
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 8.1e-68 261.5 368 46.2
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 3.1e-67 259.6 315 47.6
MD14G1046200 Malus domestica HOM05D007071 ORTHO05D008677 8.9e-67 258.1 312 51.3
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 8.9e-67 258.1 316 49.4
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 8.9e-67 258.1 330 48.2
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 2.0e-66 256.9 317 48.6
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 4.4e-66 255.8 384 44.0
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 5.8e-66 255.4 318 47.8
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 3.8e-65 252.7 314 46.8
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 4.9e-65 252.3 317 47.3
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 5.4e-64 248.8 317 46.1
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 9.3e-64 248.1 317 45.7
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 2.1e-63 246.9 317 45.7
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 7.8e-63 245.0 317 45.4
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 8.7e-62 241.5 283 51.2
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 4.3e-61 239.2 315 46.7
SGA_v2.0_scaffold31G12809 Striga asiatica HOM05D007071 ORTHO05D008677 4.3e-61 239.2 324 45.1
MSTRG.5919 Avicennia marina HOM05D007071 ORTHO05D008677 1.8e-59 233.8 314 44.3
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 4.4e-58 229.2 279 49.8
Migut.J00748 Erythranthe guttata HOM05D007071 ORTHO05D008677 2.9e-57 226.5 313 43.8
Thhalv10014358m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 4.9e-57 225.7 315 42.5
Peaxi162Scf00645g00018 Petunia axillaris HOM05D007071 ORTHO05D008677 9.3e-56 221.5 315 42.2
FAN09G1879 Fragaria x ananassa HOM05D007071 ORTHO05D008677 1.2e-55 221.1 291 45.7
Peaxi162Scf00425g00036 Petunia axillaris HOM05D007071 ORTHO05D008677 1.2e-55 221.1 315 42.2
Ciclev10012576m.g Citrus clementina HOM05D007071 ORTHO05D008677 1.6e-55 220.7 251 51.4
Haze_20090 Corylus avellana HOM05D007071 ORTHO05D008677 1.6e-55 220.7 253 51.4
Nitab4.5_0000117g0100 Nicotiana tabacum HOM05D007071 ORTHO05D008677 3.5e-55 219.5 332 43.4
ATR0697G054 Amborella trichopoda HOM05D007071 ORTHO05D008677 6.0e-55 218.8 355 42.0
Cc06_g07070 Coffea canephora HOM05D007071 ORTHO05D008677 1.5e-53 214.2 309 41.7
FAN14G3447 Fragaria x ananassa HOM05D007071 ORTHO05D008677 9.6e-53 211.5 281 46.6
Eucgr.A02532 Eucalyptus grandis HOM05D007071 ORTHO05D008677 1.6e-52 210.7 200 60.0
Ah.12g059560 Amaranthus hybridus HOM05D007071 ORTHO05D008677 2.4e-51 206.8 313 43.1
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 5.3e-51 205.7 256 50.0
Thecc.05G182200 Theobroma cacao HOM05D007071 ORTHO05D008677 3.4e-50 203.0 174 64.9
Hund10779 Selenicereus undatus HOM05D007071 ORTHO05D008677 5.8e-50 202.2 314 43.3
TAR633G1119 Trochodendron aralioides HOM05D007071 ORTHO05D008677 9.9e-50 201.4 176 60.8
Oeu028127.1 Olea europaea HOM05D007071 ORTHO05D008677 2.4e-48 196.8 249 45.4
Peaxi162Scf00414g00006 Petunia axillaris HOM05D007071 ORTHO05D008677 2.3e-46 190.3 310 40.0
EL10Ac5g11787 Beta vulgaris HOM05D007071 ORTHO05D008677 8.7e-46 188.3 291 43.6
Nitab4.5_0005508g0020 Nicotiana tabacum HOM05D007071 ORTHO05D008677 2.5e-45 186.8 286 41.3
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 3.3e-45 186.4 259 45.9
PGSC0003DMG400031498 Solanum tuberosum HOM05D007071 ORTHO05D008677 2.1e-44 183.7 281 40.9
SEGI_27522 Sequoiadendron giganteum HOM05D007071 ORTHO05D008677 6.9e-43 178.7 366 34.7
AUR62036298 Chenopodium quinoa HOM05D007071 ORTHO05D008677 2.1e-39 167.2 322 39.8
Gorai.007G240500 Gossypium raimondii HOM05D007071 ORTHO05D008677 1.5e-37 161.0 173 56.6
DCAR_020676 Daucus carota HOM05D007071 ORTHO05D008677 3.3e-37 159.8 172 50.6
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 1.6e-36 157.5 318 39.3
CSS0047921 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 2.6e-34 150.2 242 43.4
CDE10G1223 Ceratophyllum demersum HOM05D007071 ORTHO05D008677 1.9e-32 144.1 180 48.3
Eucgr.C00285 Eucalyptus grandis HOM05D007071 ORTHO05D008677 9.3e-32 141.7 96 69.8
SHI31768 Sapria himalayana HOM05D007071 ORTHO05D008677 2.4e-27 127.1 103 58.3
Gohir.A07G089166 Gossypium hirsutum HOM05D007071 ORTHO05D008677 4.1e-27 126.3 84 73.8
Zm00001eb134480 Zea mays HOM05D007071 ORTHO05D008677 1.4e-24 117.9 257 34.2
TPR.G40805 Trifolium pratense HOM05D007071 ORTHO05D008677 1.6e-23 114.4 65 87.7
AagrBONN_evm.TU.Sc2ySwM_117.1490 Anthoceros agrestis HOM05D007071 ORTHO05D008677 1.3e-20 104.8 350 27.7
Eucgr.A02531 Eucalyptus grandis HOM05D007071 ORTHO05D008677 6.3e-20 102.4 76 73.7
SMO165G0174 Selaginella moellendorffii HOM05D007071 ORTHO05D008677 7.7e-18 95.5 334 28.1
Gohir.A06G128402 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.2e-17 94.0 161 38.5
MD12G1047800 Malus domestica HOM05D007071 ORTHO05D008677 3.2e-16 90.1 101 53.5
Pp3c26_10880 Physcomitrium patens HOM05D007071 ORTHO05D008677 3.9e-14 83.2 405 24.0
arahy.Tifrunner.gnm1.ann1.88RVSM Arachis hypogaea HOM05D034159 ORTHO05D008677 1.3e-12 78.2 74 55.4
Gohir.A07G056200 Gossypium hirsutum HOM05D007071 ORTHO05D008677 1.1e-11 75.1 125 42.4
Mapoly0045s0075 Marchantia polymorpha HOM05D007071 ORTHO05D008677 1.1e-11 75.1 384 25.0
CiPaw.16G104200 Carya illinoinensis HOM05D007071 ORTHO05D008677 3.5e-10 70.1 66 56.1
Actinidia03957 Actinidia chinensis HOM05D002116 ORTHO05D002438 1.0e-09 68.6 68 54.4
Pp3c4_24350 Physcomitrium patens HOM05D007071 ORTHO05D008677 2.9e-09 67.0 114 34.2
QL02p030777 Quercus lobata HOM05D007071 ORTHO05D008677 2.9e-09 67.0 45 66.7
CSS0001330 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 3.8e-09 66.6 60 58.3
MD12G1047700 Malus domestica HOM05D007071 ORTHO05D008677 3.8e-09 66.6 44 65.9
arahy.Tifrunner.gnm1.ann1.GFC4NY Arachis hypogaea HOM05D001602 ORTHO05D001470 2.5e-08 63.9 98 42.9
Os12g0623400 Oryza sativa ssp. japonica HOM05D007071 ORTHO05D008677 3.2e-08 63.5 79 48.1
arahy.Tifrunner.gnm1.ann1.AN6BCG Arachis hypogaea HOM05D034159 ORTHO05D008677 1.6e-07 61.2 46 56.5
PGSC0003DMG400019076 Solanum tuberosum HOM05D007071 ORTHO05D008677 3.6e-07 60.1 69 43.5


User provided reference genes

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