Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.4e-294 1014.2 508 100.0
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 5.0e-269 930.6 510 91.8
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.3e-253 878.6 510 85.5
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.1e-252 876.3 509 86.1
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.9e-252 875.5 511 85.1
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.4e-250 869.4 511 85.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.2e-248 862.1 510 84.1
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.2e-248 862.1 508 83.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.9e-247 859.0 510 83.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.3e-242 842.0 510 82.4
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 9.9e-241 836.6 511 81.6
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.2e-239 831.6 511 80.6
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.1e-239 831.2 511 81.0
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-237 825.9 511 80.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.8e-216 755.0 434 85.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.5e-212 742.3 506 71.7
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.9e-208 728.8 509 70.7
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 3.8e-208 728.4 510 70.4
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.0e-205 720.3 505 70.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 3.9e-205 718.4 510 70.8
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-204 714.5 506 69.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.6e-204 713.8 510 70.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.6e-203 713.0 505 69.1
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 4.8e-203 711.4 509 68.4
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.1e-202 710.3 509 68.6
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.8e-202 709.5 513 69.2
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.8e-202 709.5 513 68.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.8e-202 709.5 496 70.0
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.3e-202 708.0 510 67.8
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.6e-201 705.7 509 68.2
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.4e-201 705.3 514 68.5
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.0e-200 703.7 512 68.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.2e-200 702.6 504 68.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.7e-198 695.7 512 68.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.3e-197 692.6 510 68.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.5e-196 689.1 532 64.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.2e-195 686.0 509 66.4
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 4.8e-195 684.9 510 67.3
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 8.2e-195 684.1 506 67.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 6.9e-194 681.0 509 67.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 9.0e-194 680.6 509 68.4
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-193 679.9 510 67.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.0e-193 679.5 525 64.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.6e-193 679.1 509 66.4
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-193 679.1 504 66.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-193 679.1 504 66.5
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 7.7e-193 677.6 510 65.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 7.7e-193 677.6 503 67.0
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.0e-192 677.2 510 67.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.0e-192 677.2 510 67.3
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.4e-191 673.3 508 65.7
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.9e-191 672.9 510 65.9
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.6e-190 668.7 515 65.2
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.1e-190 667.9 512 65.0
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 7.9e-190 667.5 503 65.6
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.1e-188 663.7 594 58.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 3.7e-187 658.7 510 65.3
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 6.3e-187 657.9 504 66.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.4e-186 656.0 507 64.5
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.0e-185 652.9 571 58.8
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.0e-184 650.6 510 64.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.3e-184 650.2 510 64.7
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 6.5e-184 647.9 509 64.6
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.4e-183 646.7 509 64.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.5e-183 646.0 509 64.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 9.4e-183 644.0 509 63.7
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.6e-182 643.3 519 64.5
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.7e-182 642.5 503 63.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 4.7e-182 641.7 478 66.1
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 7.9e-182 641.0 502 63.1
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 7.9e-182 641.0 496 65.3
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.1e-181 638.3 510 64.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 6.7e-181 637.9 510 64.1
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 8.8e-181 637.5 510 63.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.5e-180 636.7 504 63.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.3e-180 635.6 509 63.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.4e-180 635.2 518 62.5
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.4e-180 634.4 509 63.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 7.4e-180 634.4 509 63.9
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 9.7e-180 634.0 510 62.7
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.1e-178 628.6 504 64.3
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 7.0e-178 627.9 457 67.2
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.5e-177 626.7 506 61.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.0e-177 626.3 512 61.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 5.9e-177 624.8 510 61.8
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.0e-176 624.0 506 61.1
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 3.2e-175 619.0 509 62.5
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 9.4e-175 617.5 503 63.4
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 3.0e-173 612.5 501 61.9
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 6.7e-173 611.3 501 60.5
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.5e-172 610.1 553 58.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.3e-172 609.0 508 61.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 8.2e-171 604.4 545 56.7
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 4.1e-170 602.1 457 64.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.6e-169 599.4 432 68.1
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.5e-169 599.0 436 67.0
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.8e-168 595.5 466 63.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 9.7e-164 580.9 514 58.8
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.2e-161 573.9 425 67.3
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.7e-161 572.8 458 63.1
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.8e-160 568.9 478 60.0
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 7.2e-159 564.7 506 57.5
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.1e-154 550.8 461 59.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 5.4e-154 548.5 355 74.6
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.0e-152 544.3 485 56.3
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.0e-148 530.0 367 72.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.1e-143 514.2 379 66.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-140 503.8 368 66.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-137 493.0 412 60.2
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.7e-136 490.3 506 53.6
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.9e-133 478.0 446 57.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.0e-128 463.0 384 60.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.1e-118 430.3 477 47.2
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.5e-116 424.1 468 48.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-109 401.4 437 49.2
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-106 390.6 388 54.4
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.2e-106 389.4 286 67.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.3e-104 383.6 496 44.2
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-95 353.2 321 58.3
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.0e-80 303.5 450 40.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 2.4e-77 293.9 393 45.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.1e-73 280.8 459 38.1
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.5e-68 263.1 500 37.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.0e-64 250.4 241 56.0
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.5e-58 230.7 370 37.6
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 9.4e-58 228.8 498 33.7
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 4.4e-55 219.9 203 57.6
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 9.7e-55 218.8 164 68.9
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 4.9e-38 163.3 210 42.4
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.4e-37 161.0 248 39.9
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.3e-35 154.5 100 74.0
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 9.5e-34 149.1 135 60.7
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 6.1e-33 146.4 92 76.1
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.6e-26 123.2 343 26.8
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.7e-25 120.2 110 59.1
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 1.3e-19 102.1 74 73.0
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.9e-14 83.6 65 63.1
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 9.2e-13 79.3 54 66.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 6.0e-12 76.6 48 79.2
Lj3g0012363 Lotus japonicus HOM05D053840 ORTHO05D036509 1.5e-10 72.0 37 94.6
Lj6g0008505 Lotus japonicus HOM05D053840 ORTHO05D036509 1.5e-10 72.0 37 94.6
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 7.3e-10 69.7 66 60.6
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.8e-08 65.1 246 28.9
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 3.4e-07 60.8 418 23.4
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 2.9e-06 57.8 465 20.4
Duzib177G1014 Durio zibethinus HOM05D000686 ORTHO05D000512 3.7e-06 57.4 424 23.8


User provided reference genes

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