Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020491 Lotus japonicus HOM05D003579 ORTHO05D004266 8.7e-165 583.6 295 100.0
Lj3g0016828 Lotus japonicus HOM05D003579 ORTHO05D004266 2.0e-44 183.7 250 46.8
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 2.7e-25 120.2 286 32.5
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 2.7e-25 120.2 289 31.8
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 6.1e-25 119.0 288 31.2
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 8.0e-25 118.6 291 29.6
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.0e-24 118.2 295 32.2
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.0e-24 118.2 295 32.2
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 2.3e-24 117.1 286 31.5
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 3.9e-24 116.3 294 31.3
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 5.2e-24 115.9 294 31.3
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 5.2e-24 115.9 290 30.7
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 6.7e-24 115.5 286 31.8
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.5e-23 114.4 183 36.6
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 1.5e-23 114.4 179 37.4
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 2.0e-23 114.0 292 30.5
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 4.4e-23 112.8 178 37.1
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 4.4e-23 112.8 181 38.1
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 4.4e-23 112.8 181 38.7
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 4.4e-23 112.8 181 37.6
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 7.4e-23 112.1 288 29.2
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 1.7e-22 110.9 189 37.0
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 2.2e-22 110.5 285 30.5
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 2.8e-22 110.2 213 32.9
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 3.7e-22 109.8 294 31.6
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 6.3e-22 109.0 288 29.9
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.3e-22 109.0 294 30.3
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 8.2e-22 108.6 298 30.5
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 8.2e-22 108.6 289 30.8
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 1.1e-21 108.2 284 31.3
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.4e-21 107.8 291 31.3
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.4e-21 107.8 296 30.4
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.4e-21 107.8 182 36.8
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.4e-21 107.8 180 35.0
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 1.4e-21 107.8 294 30.6
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.8e-21 107.5 290 29.7
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.8e-21 107.5 293 30.4
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 2.4e-21 107.1 181 37.0
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 2.4e-21 107.1 284 30.6
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.4e-21 107.1 298 30.9
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.4e-21 107.1 179 35.2
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 3.1e-21 106.7 192 30.7
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.1e-21 106.7 298 30.2
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 3.1e-21 106.7 284 30.6
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 3.1e-21 106.7 179 33.5
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.1e-21 106.7 289 30.4
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 4.1e-21 106.3 179 34.6
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 5.3e-21 105.9 215 34.9
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 5.3e-21 105.9 271 31.4
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 7.0e-21 105.5 188 34.0
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 7.0e-21 105.5 213 32.9
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 7.0e-21 105.5 216 32.4
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 7.0e-21 105.5 285 29.8
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 7.0e-21 105.5 191 36.6
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 7.0e-21 105.5 214 30.4
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 9.1e-21 105.1 179 35.8
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 9.1e-21 105.1 191 36.6
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.2e-20 104.8 185 34.1
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.2e-20 104.8 191 36.6
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 1.2e-20 104.8 285 29.5
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 2.0e-20 104.0 180 35.6
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 2.0e-20 104.0 187 34.2
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 2.0e-20 104.0 188 33.5
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.0e-20 104.0 179 35.8
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 2.6e-20 103.6 298 30.2
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 3.5e-20 103.2 187 35.3
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 3.5e-20 103.2 179 34.6
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 3.5e-20 103.2 180 36.1
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 3.5e-20 103.2 261 31.0
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 4.5e-20 102.8 302 29.1
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 4.5e-20 102.8 302 29.1
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 4.5e-20 102.8 156 37.2
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 4.5e-20 102.8 285 29.5
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 4.5e-20 102.8 189 34.4
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 5.9e-20 102.4 196 34.2
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 5.9e-20 102.4 180 35.6
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 5.9e-20 102.4 215 33.5
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 5.9e-20 102.4 310 27.7
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 5.9e-20 102.4 296 29.4
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 5.9e-20 102.4 181 35.9
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 7.7e-20 102.1 292 28.8
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 7.7e-20 102.1 191 34.6
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 7.7e-20 102.1 181 34.8
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.0e-19 101.7 302 29.1
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 1.0e-19 101.7 196 33.7
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 1.0e-19 101.7 294 28.6
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.0e-19 101.7 298 31.5
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 1.0e-19 101.7 214 32.7
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 1.3e-19 101.3 196 33.7
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.3e-19 101.3 184 35.3
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 1.7e-19 100.9 196 33.7
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 1.7e-19 100.9 291 27.8
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.7e-19 100.9 180 35.6
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 2.9e-19 100.1 180 32.2
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 3.8e-19 99.8 178 34.3
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 3.8e-19 99.8 301 28.9
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 3.8e-19 99.8 290 27.9
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 5.0e-19 99.4 289 29.4
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 5.0e-19 99.4 285 28.4
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 6.5e-19 99.0 153 34.0
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 6.5e-19 99.0 216 30.6
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.1e-18 98.2 180 32.2
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.5e-18 97.8 187 32.1
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 1.9e-18 97.4 188 33.0
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.9e-18 97.4 222 32.0
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.9e-18 97.4 285 27.7
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.5e-18 97.1 191 30.9
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 3.2e-18 96.7 285 27.7
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 3.2e-18 96.7 237 30.8
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 4.2e-18 96.3 179 30.7
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 4.2e-18 96.3 261 28.7
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 4.2e-18 96.3 188 32.4
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 7.2e-18 95.5 178 34.3
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 7.2e-18 95.5 285 27.7
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 9.4e-18 95.1 261 28.7
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.6e-17 94.4 122 40.2
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 6.1e-17 92.4 180 30.6
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 2.3e-16 90.5 182 32.4
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 2.3e-16 90.5 322 28.0
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 4.0e-16 89.7 119 39.5
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 4.0e-16 89.7 179 32.4
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 5.2e-16 89.4 146 34.9
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 8.8e-16 88.6 180 33.9
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 2.0e-15 87.4 186 32.8
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 2.0e-15 87.4 144 33.3
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.7e-14 84.3 228 30.3
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.2e-14 84.0 127 37.0
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 4.8e-14 82.8 136 36.0
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 1.8e-13 80.9 112 39.3
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 4.1e-13 79.7 132 34.1
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 4.1e-13 79.7 106 38.7
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 9.1e-13 78.6 193 31.6
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 3.8e-11 73.2 317 25.9
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 1.2e-09 68.2 85 41.2
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 3.0e-08 63.5 197 27.4
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 4.8e-06 56.2 252 23.4
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 8.3e-06 55.5 64 37.5


User provided reference genes

Program Settings