Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 2.2e-108 395.6 196 100.0
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.3e-87 326.6 194 84.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 3.0e-81 305.4 196 77.6
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 4.0e-81 305.1 193 79.3
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 3.4e-80 302.0 193 80.3
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 6.4e-79 297.7 193 76.2
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-78 296.2 196 77.0
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.3e-76 289.3 172 83.7
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.1e-74 282.7 172 82.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.8e-73 279.6 186 74.7
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.2e-69 266.9 210 66.7
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 7.8e-61 237.7 126 90.5
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 5.1e-60 235.0 191 64.9
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 4.3e-59 231.9 181 65.7
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 7.3e-59 231.1 194 63.4
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.2e-58 230.3 190 64.2
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 2.8e-58 229.2 189 63.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 8.1e-58 227.6 191 61.8
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.1e-57 227.3 194 61.9
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 8.9e-57 224.2 179 62.6
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 3.4e-56 222.2 187 62.6
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.2e-55 219.5 180 62.8
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 2.9e-55 219.2 185 63.8
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.8e-55 218.8 183 61.7
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.4e-54 216.9 269 47.6
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.9e-54 216.5 164 65.9
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 2.4e-54 216.1 194 59.3
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.2e-54 215.7 180 61.1
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 4.2e-54 215.3 197 58.9
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 7.1e-54 214.5 198 60.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.7e-53 212.6 188 60.1
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.0e-53 211.5 188 59.6
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.8e-53 211.1 190 57.4
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 7.8e-53 211.1 183 56.8
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 1.0e-52 210.7 185 61.1
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.0e-52 210.7 182 61.0
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 2.3e-52 209.5 172 63.4
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 3.9e-52 208.8 184 59.8
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.9e-52 208.8 192 56.2
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 6.6e-52 208.0 185 60.5
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 8.7e-52 207.6 202 56.9
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.1e-51 207.2 184 59.2
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.5e-51 206.1 184 60.3
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 2.5e-51 206.1 178 61.2
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 2.5e-51 206.1 187 59.9
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.3e-51 205.3 164 67.7
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 7.3e-51 204.5 175 62.9
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 9.6e-51 204.1 187 62.0
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 2.1e-50 203.0 184 58.2
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.6e-50 202.2 148 69.6
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 3.6e-50 202.2 189 58.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.7e-50 201.8 189 58.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-49 199.9 166 63.3
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.8e-49 199.9 191 56.5
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.3e-49 198.4 168 66.1
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 5.3e-49 198.4 182 59.9
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.4e-48 195.7 180 61.1
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 5.8e-48 194.9 189 55.6
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.6e-48 194.5 128 78.9
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.7e-47 193.4 154 62.3
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.2e-47 193.0 168 60.1
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 2.2e-47 193.0 186 53.2
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-47 192.2 192 54.7
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-47 192.2 192 54.7
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-47 192.2 192 54.7
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 6.4e-47 191.4 191 55.5
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 6.4e-47 191.4 184 58.7
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 8.4e-47 191.0 209 50.7
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.9e-46 189.9 169 58.0
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-46 189.9 192 55.2
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.4e-46 189.5 203 52.2
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.4e-46 188.3 154 63.0
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.4e-46 188.3 161 58.4
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.2e-45 187.2 190 54.7
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 2.1e-45 186.4 160 60.0
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.5e-45 185.7 180 54.4
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.1e-44 181.8 162 58.0
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.1e-43 180.6 182 55.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.5e-43 180.3 166 59.0
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 2.5e-43 179.5 180 53.9
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.3e-43 179.1 182 54.9
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 4.3e-43 178.7 180 53.3
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 4.3e-43 178.7 165 57.0
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 5.6e-43 178.3 183 53.0
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 9.6e-43 177.6 182 51.6
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 9.6e-43 177.6 152 59.9
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.3e-42 177.2 161 59.0
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.3e-42 177.2 151 60.9
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 2.1e-42 176.4 161 57.1
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 3.6e-42 175.6 154 57.8
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.4e-41 173.7 149 59.1
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.8e-41 173.3 173 56.1
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.5e-40 170.2 145 64.1
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.4e-40 169.1 158 55.7
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 3.4e-40 169.1 171 55.0
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.8e-40 168.3 162 56.2
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 7.6e-40 167.9 157 57.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.1e-38 164.1 176 52.3
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.1e-38 161.4 141 58.9
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.2e-37 160.6 173 52.6
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 3.5e-37 159.1 148 58.8
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 6.0e-37 158.3 157 54.8
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.1e-33 147.5 172 45.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 3.1e-33 146.0 155 52.9
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.0e-32 143.3 128 58.6
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 5.8e-32 141.7 121 61.2
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 7.6e-32 141.4 184 49.5
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 9.9e-32 141.0 117 59.0
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.9e-31 139.4 179 47.5
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-30 137.1 144 54.2
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 4.2e-30 135.6 137 53.3
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 7.1e-30 134.8 114 67.5
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.6e-29 133.7 109 61.5
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 4.6e-29 132.1 116 60.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.8e-28 130.2 188 45.7
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.5e-27 126.3 159 41.5
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.3e-26 124.0 165 42.4
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-26 123.6 182 45.6
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.6e-26 123.6 182 45.6
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 2.1e-26 123.2 182 42.9
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.3e-25 118.6 138 50.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 2.6e-24 116.3 117 58.1
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 7.1e-22 108.2 109 53.2
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 2.7e-21 106.3 90 62.2
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.3e-20 103.2 81 64.2
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 4.5e-16 89.0 94 51.1
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 4.6e-13 79.0 75 54.7
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 3.7e-10 69.3 174 32.2
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.1e-09 66.2 97 46.4
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 5.3e-09 65.5 74 55.4
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 9.1e-09 64.7 68 44.1
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.5e-08 63.9 44 65.9
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-08 62.8 86 39.5
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.5e-06 56.6 64 46.9
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 4.2e-06 55.8 162 27.8


User provided reference genes

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