Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.5e-164 582.8 294 100.0
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.9e-141 505.0 294 88.8
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 9.4e-135 483.8 295 83.4
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.1e-130 470.3 296 82.1
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.9e-128 462.2 298 78.9
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.1e-127 460.3 298 77.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.9e-127 459.5 298 79.5
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 9.4e-127 457.2 297 79.8
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 6.1e-126 454.5 298 77.9
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.3e-124 448.7 297 77.1
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.7e-123 446.4 297 76.4
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 8.2e-123 444.1 297 77.4
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.1e-122 442.2 299 77.3
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.8e-114 416.4 296 72.6
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.7e-113 412.5 294 72.4
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.5e-113 412.1 295 71.2
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 2.2e-112 409.5 295 71.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 8.5e-112 407.5 295 70.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.5e-111 406.8 295 70.2
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.5e-111 406.8 295 71.2
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.5e-111 404.8 295 71.5
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 9.4e-111 404.1 295 70.8
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.7e-110 402.5 297 71.7
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.7e-110 402.5 295 69.5
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.7e-110 401.7 233 84.1
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 6.1e-110 401.4 298 69.8
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 3.0e-109 399.1 302 70.2
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.8e-109 397.9 295 68.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 6.8e-109 397.9 295 70.2
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 6.8e-109 397.9 293 70.0
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.8e-109 397.5 297 69.4
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 5.7e-108 394.8 296 69.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 7.5e-108 394.4 295 68.8
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 9.8e-108 394.0 296 69.3
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 9.8e-108 394.0 295 67.1
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.7e-107 393.3 295 70.2
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.7e-107 393.3 295 70.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.7e-107 393.3 295 68.5
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.7e-107 393.3 297 68.4
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.7e-107 393.3 290 70.7
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.2e-107 392.9 295 68.5
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.8e-107 392.5 295 66.8
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.7e-107 392.1 285 71.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.4e-106 389.4 297 66.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.4e-106 389.4 298 68.5
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 3.1e-106 389.0 295 68.1
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 4.1e-106 388.7 297 68.4
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 5.4e-106 388.3 296 68.9
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 7.0e-106 387.9 296 68.2
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 9.2e-106 387.5 295 68.8
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.2e-105 387.1 319 64.9
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 2.0e-105 386.3 295 68.5
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.7e-105 386.0 298 68.8
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 5.9e-105 384.8 296 67.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 5.9e-105 384.8 295 67.1
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.9e-105 384.8 295 67.5
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 5.9e-105 384.8 300 66.0
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 7.7e-105 384.4 311 65.6
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 7.7e-105 384.4 298 67.4
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 7.7e-105 384.4 298 68.1
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.3e-104 383.6 296 67.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.3e-104 383.6 298 68.1
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 3.8e-104 382.1 303 65.3
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 5.0e-104 381.7 296 66.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 6.6e-104 381.3 295 66.4
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 6.6e-104 381.3 236 77.1
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 6.6e-104 381.3 295 65.4
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.5e-103 380.2 296 67.6
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.9e-103 379.8 296 67.6
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.9e-103 379.8 252 76.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 2.5e-103 379.4 305 65.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 5.6e-103 378.3 233 78.5
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 5.6e-103 378.3 233 78.5
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 5.6e-103 378.3 233 78.5
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 9.5e-103 377.5 297 67.0
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.6e-102 376.7 229 79.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.6e-102 376.7 294 66.7
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.6e-102 376.7 297 67.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.1e-102 376.3 239 77.4
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.1e-102 376.3 295 65.8
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 8.0e-102 374.4 331 62.2
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 8.0e-102 374.4 297 65.0
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.4e-101 373.6 226 79.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.8e-101 373.2 298 65.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 2.3e-101 372.9 332 62.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.3e-101 372.9 310 65.5
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 2.3e-101 372.9 298 65.8
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.0e-101 372.5 239 76.2
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 5.2e-101 371.7 228 79.4
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 6.8e-101 371.3 226 80.5
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.0e-100 369.8 255 74.1
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.4e-100 369.0 220 80.9
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 5.7e-100 368.2 298 65.1
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.3e-99 367.1 300 65.3
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 8.3e-99 364.4 366 57.4
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.6e-97 360.1 233 75.5
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 7.8e-97 357.8 221 77.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.0e-96 355.1 244 73.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 6.6e-96 354.8 218 78.9
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 4.3e-95 352.1 347 58.2
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-94 349.7 305 62.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 4.7e-94 348.6 258 67.8
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 6.2e-94 348.2 248 71.8
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 8.0e-94 347.8 226 76.5
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.3e-93 346.3 276 63.0
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 4.0e-93 345.5 228 74.1
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.4e-92 342.4 252 67.1
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 6.4e-91 338.2 201 82.6
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.4e-90 336.3 295 59.7
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.0e-90 334.7 295 61.7
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.0e-89 333.2 285 62.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.3e-88 329.7 295 60.3
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 9.5e-87 324.3 258 66.3
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 6.2e-86 321.6 266 65.8
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.8e-85 320.1 263 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 5.2e-85 318.5 226 67.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.4e-82 309.7 253 60.5
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.7e-81 306.2 222 64.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.9e-80 302.4 190 77.4
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 5.1e-80 302.0 213 69.0
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 5.2e-77 292.0 218 65.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 6.8e-77 291.6 188 75.0
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 2.9e-75 286.2 237 64.1
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.7e-67 260.4 231 55.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.9e-66 256.9 232 57.8
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 8.1e-62 241.5 215 55.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 7.6e-60 235.0 288 50.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 8.4e-59 231.5 140 80.7
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 9.3e-58 228.0 214 53.7
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 9.3e-58 228.0 214 53.7
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.7e-57 226.5 427 37.9
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.9e-55 220.3 140 75.7
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.9e-53 211.8 132 77.3
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-49 201.1 234 44.4
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.0e-48 198.0 234 44.0
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.9e-48 196.1 234 43.6
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 8.7e-48 194.9 186 55.9
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 9.3e-42 174.9 138 65.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 7.4e-39 165.2 167 55.1
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.6e-38 164.1 162 56.8
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.7e-38 162.9 110 72.7
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.4e-37 160.2 97 80.4
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.0e-35 152.5 97 78.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 5.1e-32 142.5 140 52.9
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 4.3e-31 139.4 81 81.5
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 9.4e-26 121.7 101 64.4
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 3.9e-24 116.3 92 66.3
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 9.1e-21 105.1 159 46.5
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.2e-20 104.8 67 73.1
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.3e-19 101.3 156 44.2
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.8e-13 80.9 51 74.5
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 5.7e-07 59.3 176 33.0


User provided reference genes

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