Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.0e-38 160.6 80 100.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 9.0e-32 139.8 79 83.5
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.2e-31 139.4 80 82.5
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.9e-30 134.8 78 83.3
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 5.5e-29 130.6 80 76.2
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 5.5e-29 130.6 76 78.9
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 7.2e-29 130.2 80 76.2
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.3e-27 125.2 81 74.1
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 6.7e-27 123.6 80 73.8
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.2e-25 116.7 80 75.0
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 3.1e-24 114.8 75 73.3
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 5.3e-24 114.0 79 69.6
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 9.1e-24 113.2 80 71.2
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 9.1e-24 113.2 77 64.9
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-23 112.8 72 75.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.1e-21 106.3 74 63.5
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.1e-20 102.1 76 64.5
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.6e-20 101.3 57 75.4
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.6e-20 101.3 57 75.4
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 6.1e-20 100.5 80 58.8
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 7.9e-20 100.1 80 53.8
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.4e-19 99.4 72 61.1
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.8e-19 99.0 83 55.4
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.9e-19 97.8 72 58.3
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-18 96.3 72 56.9
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-18 96.3 72 56.9
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.0e-18 95.5 72 56.9
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.3e-18 94.7 72 55.6
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 7.4e-18 93.6 84 53.6
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.3e-17 92.8 82 53.7
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 4.8e-17 90.9 80 56.2
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 6.3e-17 90.5 78 57.7
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 6.3e-17 90.5 78 57.7
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.1e-16 89.7 81 53.1
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.8e-16 89.0 80 50.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 2.4e-16 88.6 74 55.4
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.3e-16 87.4 79 55.7
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.1e-16 86.7 75 57.3
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.5e-15 84.7 74 54.1
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.5e-15 84.7 74 54.1
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.5e-15 84.3 74 54.1
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.7e-15 83.6 81 55.6
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 7.7e-15 83.6 81 51.9
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-14 83.2 77 53.2
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.9e-14 81.6 79 55.7
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.8e-14 81.3 71 50.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 5.0e-14 80.9 78 46.2
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.1e-13 79.7 77 53.2
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.1e-13 79.7 72 55.6
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.5e-13 79.3 81 48.1
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.5e-13 79.3 77 50.6
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.5e-13 79.3 78 48.7
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.9e-13 79.0 58 55.2
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.5e-13 78.6 84 48.8
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.5e-13 78.6 80 48.8
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 2.5e-13 78.6 80 48.8
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.2e-13 77.8 82 48.8
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.5e-13 77.4 85 45.9
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.5e-13 77.4 84 47.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.5e-13 77.4 79 48.1
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 7.2e-13 77.0 67 47.8
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 7.2e-13 77.0 67 47.8
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.4e-13 76.6 77 50.6
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.2e-12 76.3 75 50.7
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.6e-12 75.9 72 48.6
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.6e-12 75.9 71 50.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.6e-12 75.9 79 49.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.6e-12 75.9 75 54.7
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-12 75.1 69 56.5
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.7e-12 75.1 72 51.4
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.6e-12 74.7 73 47.9
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.6e-12 74.7 65 53.8
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.7e-12 74.3 80 42.5
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.0e-11 73.2 77 53.2
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.8e-11 72.4 80 43.8
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.3e-11 72.0 70 50.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.0e-11 71.6 73 50.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 5.2e-11 70.9 80 42.5
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.2e-11 70.9 72 48.6
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 5.2e-11 70.9 82 43.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 6.7e-11 70.5 83 48.2
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 6.7e-11 70.5 66 54.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.1e-10 69.7 46 60.9
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.1e-10 69.7 75 48.0
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.5e-10 69.3 41 68.3
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.0e-10 68.9 73 43.8
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.6e-10 68.6 81 45.7
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.6e-10 68.6 80 43.8
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.6e-10 68.6 74 48.6
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 3.3e-10 68.2 43 58.1
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 4.4e-10 67.8 46 58.7
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 68 50.0
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.7e-09 65.9 73 43.8
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.2e-09 65.5 80 46.2
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.2e-09 65.5 77 46.8
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 2.8e-09 65.1 79 41.8
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 3.7e-09 64.7 76 47.4
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.8e-09 64.3 68 45.6
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 6.3e-09 63.9 82 42.7
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 8.2e-09 63.5 81 42.0
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.2e-09 63.5 68 48.5
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 8.2e-09 63.5 100 36.0
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.1e-08 63.2 72 45.8
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 1.8e-08 62.4 59 49.2
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 3.1e-08 61.6 72 38.9
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.1e-08 61.2 68 42.6
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 9.1e-08 60.1 76 43.4
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.2e-07 59.7 61 49.2
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.6e-07 59.3 81 37.0
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.0e-07 58.9 85 37.6
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 2.0e-07 58.9 52 57.7
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 2.7e-07 58.5 74 45.9
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 2.7e-07 58.5 41 53.7
Medtr4g029470 Medicago truncatula HOM05D006892 ORTHO05D259580 4.5e-07 57.8 34 76.5
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 5.9e-07 57.4 81 37.0
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 1.3e-06 56.2 76 36.8
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-06 55.8 82 36.6
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 3.8e-06 54.7 47 48.9


User provided reference genes

Program Settings