Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 2.1e-75 285.4 129 100.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 4.8e-59 231.1 132 78.8
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 3.1e-58 228.4 141 76.6
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 5.3e-58 227.6 131 81.7
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 6.9e-58 227.3 141 76.6
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 3.4e-57 224.9 129 80.6
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 7.7e-57 223.8 130 78.5
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.9e-56 221.9 130 76.9
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.9e-56 221.9 134 78.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.4e-55 219.5 131 76.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.4e-55 219.5 124 81.5
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 3.2e-55 218.4 130 76.9
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 4.7e-54 214.5 112 83.0
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.0e-53 213.4 112 83.9
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.0e-53 213.4 112 83.9
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.8e-53 212.6 130 73.8
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 3.0e-53 211.8 135 72.6
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.0e-53 211.8 130 73.8
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.9e-53 211.5 112 82.1
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 5.2e-53 211.1 130 73.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 5.2e-53 211.1 112 82.1
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.2e-53 211.1 130 72.3
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 8.8e-53 210.3 112 80.4
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 7.4e-52 207.2 129 73.6
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.4e-52 207.2 112 81.2
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.3e-51 206.5 130 72.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 2.2e-51 205.7 130 71.5
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.8e-51 205.3 130 73.1
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.8e-51 205.3 112 78.6
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 3.7e-51 204.9 138 70.3
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.7e-51 204.9 112 78.6
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 6.3e-51 204.1 112 79.5
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 6.3e-51 204.1 112 80.4
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.3e-51 204.1 115 76.5
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 8.2e-51 203.8 138 70.3
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.2e-51 203.8 130 72.3
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.4e-50 203.0 112 79.5
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.8e-50 202.6 130 70.8
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.8e-50 202.6 112 78.6
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.8e-50 202.6 112 77.7
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.8e-50 202.6 135 69.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 2.4e-50 202.2 135 70.4
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 4.1e-50 201.4 135 70.4
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.1e-50 201.4 130 70.8
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.1e-50 201.4 130 70.8
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.0e-50 200.7 112 78.6
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.1e-50 200.3 130 70.0
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 9.1e-50 200.3 112 78.6
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.2e-49 199.9 130 70.8
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.6e-49 199.5 112 77.7
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.6e-49 198.7 112 76.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.0e-48 196.8 116 74.1
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.0e-48 196.8 130 71.5
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.0e-48 196.8 116 74.1
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.0e-48 196.8 130 70.8
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.0e-48 196.8 144 65.3
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-48 196.4 116 74.1
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.7e-48 196.1 130 71.5
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.7e-48 196.1 112 75.9
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 2.2e-48 195.7 135 67.4
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 2.2e-48 195.7 135 67.4
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 2.2e-48 195.7 112 76.8
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.9e-48 195.3 130 68.5
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 2.9e-48 195.3 112 75.9
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 3.8e-48 194.9 115 72.2
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 3.8e-48 194.9 130 66.9
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 5.0e-48 194.5 115 72.2
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 5.0e-48 194.5 112 75.9
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.0e-48 194.5 130 70.8
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 6.5e-48 194.1 112 72.3
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 6.5e-48 194.1 112 74.1
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 8.5e-48 193.7 112 76.8
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 8.5e-48 193.7 112 76.8
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 8.5e-48 193.7 112 76.8
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.9e-47 192.6 146 62.3
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.5e-47 192.2 135 66.7
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 2.5e-47 192.2 135 67.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.5e-47 192.2 114 74.6
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 3.2e-47 191.8 135 65.9
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 3.2e-47 191.8 135 65.9
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.2e-47 191.8 135 65.9
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 7.2e-47 190.7 110 74.5
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 9.4e-47 190.3 112 72.3
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 9.4e-47 190.3 135 65.9
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 9.4e-47 190.3 115 70.4
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.2e-46 189.9 112 73.2
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.2e-46 189.9 112 74.1
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.6e-46 189.5 135 65.2
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.1e-46 189.1 135 65.2
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 2.1e-46 189.1 112 74.1
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 3.6e-46 188.3 135 65.9
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 3.6e-46 188.3 135 65.2
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.6e-46 188.3 136 66.2
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.6e-46 188.3 136 66.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.7e-46 188.0 112 69.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 6.1e-46 187.6 135 64.4
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 8.0e-46 187.2 136 65.4
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.0e-45 186.8 112 68.8
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 4.0e-45 184.9 130 66.2
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.3e-43 179.9 129 64.3
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.2e-43 179.1 112 70.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.4e-42 176.4 115 68.7
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.4e-42 176.4 128 64.8
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.4e-42 175.6 112 69.6
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 9.1e-42 173.7 156 53.8
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 2.2e-40 169.1 141 51.8
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.2e-40 169.1 105 71.4
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.2e-40 169.1 105 71.4
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.1e-38 162.5 88 79.5
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.8e-35 152.1 113 59.3
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.4e-34 149.8 159 50.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.6e-33 146.4 133 50.4
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.5e-31 139.8 112 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 9.5e-31 137.1 97 56.7
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.6e-30 136.3 112 52.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 6.1e-30 134.4 87 71.3
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.0e-29 133.7 107 60.7
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.0e-28 129.4 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.2e-27 125.9 132 45.5
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-25 120.2 56 87.5
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.6e-24 114.0 55 80.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.4e-18 95.9 105 49.5
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.2e-12 77.0 104 42.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.0e-10 67.8 44 68.2
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 9.2e-10 67.4 60 53.3
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.7e-09 65.9 96 40.6
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.3e-08 63.5 43 62.8
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.7e-08 63.2 104 35.6
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.0e-08 62.4 44 65.9
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 3.9e-08 62.0 49 57.1
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-07 60.1 59 52.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.9e-07 59.7 43 65.1
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.5e-07 57.4 43 62.8
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 4.7e-06 55.1 36 72.2


User provided reference genes

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