Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 2.2e-157 558.9 281 100.0
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 2.8e-128 462.2 284 83.1
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 4.0e-127 458.4 281 81.1
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 6.9e-127 457.6 283 81.6
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 4.5e-126 454.9 281 82.6
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 7.1e-124 447.6 305 76.1
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 1.8e-119 433.0 283 77.4
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 1.2e-110 403.7 282 70.9
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.2e-109 399.4 289 69.2
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 1.1e-108 397.1 278 71.9
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.9e-108 396.4 267 72.7
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 3.2e-108 395.6 282 69.5
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.6e-107 393.3 280 70.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.6e-107 393.3 275 70.5
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.7e-107 392.5 281 69.8
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 5.1e-106 388.3 281 70.5
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.1e-105 387.1 258 72.5
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.5e-105 386.7 271 70.8
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 1.9e-105 386.3 237 81.9
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 4.3e-105 385.2 284 69.4
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 7.4e-105 384.4 278 68.3
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 1.3e-104 383.6 275 70.2
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 4.8e-104 381.7 228 81.6
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 1.4e-103 380.2 228 81.1
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.4e-103 380.2 282 68.4
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 5.3e-103 378.3 281 68.0
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.4e-102 375.6 273 67.0
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 3.4e-102 375.6 276 66.7
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 4.5e-102 375.2 285 67.4
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 5.9e-102 374.8 271 68.3
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 7.7e-102 374.4 290 64.5
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 1.3e-101 373.6 281 66.9
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 2.9e-101 372.5 257 71.6
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 6.5e-101 371.3 274 66.4
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.4e-100 370.2 273 65.9
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.4e-100 370.2 273 65.9
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 4.2e-100 368.6 267 69.7
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 4.2e-100 368.6 274 66.8
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 4.2e-100 368.6 285 66.3
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 5.5e-100 368.2 286 64.3
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 5.5e-100 368.2 303 62.4
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 7.2e-100 367.9 273 66.3
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 9.4e-100 367.5 273 66.7
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 9.4e-100 367.5 281 66.5
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.1e-99 366.3 283 66.8
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 6.1e-99 364.8 267 67.0
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 1.0e-98 364.0 285 66.3
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 1.4e-98 363.6 262 69.8
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.4e-98 363.6 291 63.2
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.4e-98 363.6 254 69.7
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 5.1e-98 361.7 268 67.5
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 5.1e-98 361.7 254 69.3
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 8.8e-98 360.9 283 65.0
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 8.8e-98 360.9 248 70.6
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.1e-97 360.5 318 58.8
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.5e-97 360.1 281 65.8
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 2.2e-96 356.3 249 67.9
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 2.8e-96 355.9 303 60.4
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 6.3e-96 354.8 277 63.9
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.1e-95 354.0 284 64.8
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 1.4e-95 353.6 284 64.1
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 1.4e-95 353.6 262 67.6
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.8e-95 353.2 284 64.1
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 6.9e-95 351.3 276 64.5
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 1.0e-93 347.4 300 59.0
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.0e-93 347.4 256 68.0
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.3e-93 347.1 234 73.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.1e-92 344.0 231 71.4
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.9e-92 343.2 267 65.2
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 2.5e-92 342.8 229 72.1
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 4.2e-92 342.0 253 65.6
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 1.6e-91 340.1 254 65.7
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 1.6e-91 340.1 228 72.4
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 4.7e-91 338.6 281 60.9
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 4.7e-91 338.6 275 61.1
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 1.4e-90 337.0 200 82.0
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 4.4e-89 332.0 229 69.0
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 5.7e-89 331.6 228 69.3
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 7.4e-89 331.3 229 67.7
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.2e-86 323.9 285 61.1
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 2.0e-86 323.2 271 60.1
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 4.5e-86 322.0 266 59.4
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 5.5e-84 315.1 261 59.0
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 2.3e-82 309.7 254 61.4
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 3.0e-82 309.3 215 69.3
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 9.1e-79 297.7 218 68.8
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.5e-78 295.8 203 70.4
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 7.7e-78 294.7 204 70.6
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 8.8e-74 281.2 206 68.4
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 1.2e-73 280.8 202 68.3
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 2.0e-73 280.0 259 54.8
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 4.4e-73 278.9 261 59.0
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 2.6e-65 253.1 253 49.8
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 2.6e-65 253.1 246 50.8
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 4.4e-65 252.3 183 65.0
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 5.7e-65 251.9 213 63.4
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 7.0e-63 245.0 275 48.7
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 1.2e-62 244.2 245 49.8
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 8.6e-61 238.0 164 71.3
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.0e-58 231.1 221 56.6
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 9.2e-55 218.0 246 46.7
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.9e-48 196.4 281 45.6
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 2.7e-46 189.9 279 39.1
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.1e-44 184.5 134 68.7
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 1.4e-31 141.0 183 41.0
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.9e-31 140.6 110 61.8
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.4e-25 119.8 98 59.2
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 5.8e-25 119.0 98 59.2
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 9.3e-23 111.7 304 30.6
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.3e-21 107.8 342 28.4
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 2.2e-16 90.5 247 30.8
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.2e-14 84.7 102 48.0
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 1.1e-10 71.6 102 46.1
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 9.0e-10 68.6 47 68.1
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 6.4e-08 62.4 55 61.8
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 7.1e-07 58.9 49 55.1
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 1.2e-06 58.2 49 53.1
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 1.2e-06 58.2 49 53.1
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 1.2e-06 58.2 49 53.1
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.1e-06 57.4 39 59.0


User provided reference genes

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