Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 0.0e+00 1726.5 877 100.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1353.2 878 79.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1351.7 878 78.8
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1310.0 881 77.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 0.0e+00 1298.1 879 75.8
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 0.0e+00 1286.9 878 75.5
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 0.0e+00 1274.2 878 75.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1224.2 863 72.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1212.2 868 72.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1180.2 875 72.0
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 0.0e+00 1157.9 879 70.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 0.0e+00 1142.5 878 69.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1096.6 851 69.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.5e-294 1015.0 883 61.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.3e-292 1008.4 881 60.7
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 7.8e-286 987.3 881 59.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 8.6e-285 983.8 872 58.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 8.1e-283 977.2 884 58.8
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.4e-274 949.9 879 57.8
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.2e-271 938.3 878 57.9
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.9e-269 931.8 881 56.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.6e-268 927.9 880 56.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.1e-267 926.0 881 55.7
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.8e-266 922.9 883 56.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.2e-265 920.2 880 55.9
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.0e-265 919.5 881 56.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 9.9e-265 917.1 880 55.5
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.8e-264 915.2 884 57.1
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 6.4e-264 914.4 868 56.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.1e-263 911.0 879 56.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 8.7e-261 904.0 878 55.1
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.5e-260 903.3 880 55.7
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.6e-260 901.4 882 55.2
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.8e-258 896.3 883 56.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-256 890.2 882 54.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-256 890.2 881 54.5
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.2e-256 889.4 876 54.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.5e-252 876.7 882 54.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 3.7e-251 872.1 889 53.8
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.4e-250 870.2 918 52.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.4e-250 870.2 891 53.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.8e-250 869.8 893 53.8
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 3.1e-250 869.0 918 53.1
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.5e-249 865.1 884 53.2
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.4e-247 860.1 887 52.2
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.1e-246 856.3 836 54.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.8e-245 853.2 941 52.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.5e-244 850.1 767 58.9
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.4e-244 847.8 881 53.3
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.8e-242 843.2 857 55.4
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 6.9e-242 841.3 881 51.9
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.9e-240 835.9 745 59.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 5.0e-240 835.1 883 51.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 7.1e-239 831.2 865 51.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.1e-239 831.2 900 51.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 7.1e-239 831.2 883 51.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.0e-237 827.4 948 49.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.2e-235 819.7 880 49.9
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.4e-231 807.0 883 50.4
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-229 800.4 882 49.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.5e-228 796.2 887 49.0
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-226 790.8 884 48.0
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.8e-226 790.0 880 49.2
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 3.2e-223 779.2 859 50.3
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-220 770.8 884 47.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.3e-220 769.2 883 47.6
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 9.7e-220 767.7 882 48.8
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.5e-217 760.4 903 48.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 7.7e-217 758.1 729 55.3
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.9e-215 753.4 884 46.4
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.0e-213 747.7 880 48.4
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.4e-212 742.3 885 46.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 8.2e-211 738.0 903 47.3
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 6.5e-208 728.4 880 46.4
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.5e-207 727.2 699 55.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 7.2e-207 724.9 951 44.8
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.3e-205 719.9 884 45.4
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.2e-205 718.8 895 46.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.1e-202 709.1 908 45.4
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 5.4e-202 708.8 651 59.6
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 3.5e-201 706.1 888 45.6
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.5e-201 705.7 889 45.4
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.3e-200 704.1 726 52.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 6.5e-200 701.8 888 45.6
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 8.5e-200 701.4 889 45.2
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.6e-198 697.2 694 53.2
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.0e-197 694.5 881 44.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-197 694.1 888 45.3
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.4e-197 694.1 888 45.0
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.5e-196 688.3 881 45.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 6.3e-195 685.3 886 45.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.5e-193 679.5 934 43.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.5e-191 673.3 895 44.1
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.5e-191 672.2 833 46.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 9.5e-191 671.4 817 47.5
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.7e-190 669.1 887 44.0
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 8.0e-190 668.3 892 43.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 8.0e-182 641.7 709 50.8
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.4e-180 636.3 667 51.4
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 5.6e-175 619.0 892 41.9
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.4e-172 609.8 701 49.8
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.4e-170 603.6 650 50.6
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.5e-156 557.8 881 39.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 3.4e-156 556.6 813 43.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.5e-151 541.2 638 47.5
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.4e-148 530.0 695 43.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.9e-143 514.2 904 37.7
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 5.8e-140 502.7 555 50.6
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.0e-136 490.3 633 44.5
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 6.9e-133 479.2 788 38.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.0e-132 477.6 750 38.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.5e-129 466.8 891 36.7
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.4e-122 444.9 685 39.3
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.9e-119 434.5 543 44.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 6.7e-112 409.5 759 37.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.1e-109 400.6 354 64.4
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.9e-98 364.8 262 70.6
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.1e-93 347.4 596 38.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.5e-90 337.8 291 62.2
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.1e-89 334.7 240 69.6
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.4e-85 321.2 193 85.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.1e-85 320.9 585 35.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.9e-84 316.6 957 28.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.9e-84 316.6 957 28.1
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.2e-83 314.7 239 64.9
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 8.8e-80 302.8 958 27.8
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 3.4e-79 300.8 746 31.8
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 8.0e-73 279.6 192 72.4
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.3e-72 278.1 520 33.7
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 6.4e-70 270.0 208 62.5
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.6e-68 265.4 191 68.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.4e-54 216.9 351 36.5
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.1e-53 216.1 757 27.3
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.6e-52 210.7 266 47.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 9.5e-50 203.0 143 72.0
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.4e-47 194.5 190 54.2
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 2.4e-45 188.3 251 45.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.4e-45 187.2 199 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.2e-44 186.0 331 35.3
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.0e-43 181.4 214 46.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.6e-41 175.6 145 62.8
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.8e-38 164.5 164 53.7
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 3.8e-38 164.5 96 80.2
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.9e-37 162.2 215 43.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 2.4e-37 161.8 186 46.2
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 7.1e-37 160.2 95 78.9
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 6.0e-36 157.1 108 68.5
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-35 156.0 215 38.6
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.6e-34 149.8 201 43.3
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.1e-33 148.7 178 43.8
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.5e-31 141.0 96 78.1
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 4.2e-29 134.4 84 81.0
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.1e-28 132.1 275 33.5
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.2e-22 112.1 103 58.3
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 5.5e-21 107.5 438 25.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 7.9e-20 103.6 203 31.5
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.0e-19 101.7 170 44.1
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.0e-19 101.7 110 48.2
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.3e-17 96.3 186 33.3
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.8e-17 95.1 168 35.1
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.2e-15 89.7 50 88.0
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.7e-09 68.2 118 33.1
Psat7g011720 Pisum sativum HOM05D000081 ORTHO05D004978 1.2e-07 63.2 40 70.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 60.1 95 36.8
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.3e-06 59.7 179 27.4


User provided reference genes

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