Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 7.0e-130 467.2 226 100.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.3e-120 435.6 225 92.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 8.6e-120 433.7 225 92.0
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.5e-119 433.0 223 92.8
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.5e-119 433.0 225 91.6
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.5e-119 432.2 225 91.1
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.1e-118 429.1 225 90.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.8e-118 428.7 223 91.0
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 4.7e-118 427.9 225 89.3
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 6.1e-118 427.6 225 87.1
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 2.3e-117 425.6 226 90.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.0e-117 425.2 220 91.8
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 3.0e-117 425.2 225 89.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.9e-117 423.7 224 87.1
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.2e-116 423.3 225 88.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-116 423.3 224 87.5
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.7e-116 421.0 224 86.6
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 9.8e-116 420.2 225 88.4
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 9.8e-116 420.2 224 87.9
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.8e-115 418.7 224 87.5
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.7e-115 418.3 224 86.6
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.1e-114 416.8 225 88.9
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.1e-114 416.8 224 85.3
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.8e-114 416.0 224 86.2
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.5e-113 411.8 219 88.6
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.5e-113 411.8 224 87.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 4.6e-113 411.4 221 88.2
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 5.9e-113 411.0 224 86.2
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 5.9e-113 411.0 224 86.6
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.9e-112 408.3 219 87.7
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 3.9e-112 408.3 221 86.4
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.6e-112 407.5 219 88.6
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.1e-111 406.8 224 85.7
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.5e-111 406.4 222 86.0
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 84.4
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.5e-111 405.6 223 85.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.5e-111 405.6 224 85.3
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 83.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 3.3e-111 405.2 221 86.9
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 83.0
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 85.3
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 4.3e-111 404.8 225 88.4
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 5.6e-111 404.4 224 84.8
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 5.6e-111 404.4 219 86.3
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 7.3e-111 404.1 221 86.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 84.4
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 9.5e-111 403.7 221 86.0
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 9.5e-111 403.7 224 84.8
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 2.1e-110 402.5 224 86.2
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 85.5
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 85.7
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 84.6
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.6e-110 401.7 224 85.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 4.7e-110 401.4 222 83.8
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 4.7e-110 401.4 224 83.0
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 4.7e-110 401.4 221 85.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 6.1e-110 401.0 223 83.9
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 8.0e-110 400.6 221 84.2
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 8.0e-110 400.6 224 83.9
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 84.7
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.4e-109 399.8 221 85.1
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.8e-109 399.4 225 84.4
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.8e-109 399.4 224 83.9
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.8e-109 399.4 224 83.0
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-109 399.4 224 82.6
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 3.1e-109 398.7 223 83.9
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 4.0e-109 398.3 225 83.1
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 5.2e-109 397.9 218 85.8
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 83.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 5.2e-109 397.9 225 83.1
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.2e-109 397.9 221 84.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.8e-109 397.5 221 81.9
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 8.9e-109 397.1 219 85.8
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 8.9e-109 397.1 225 83.6
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 8.9e-109 397.1 225 83.6
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 8.9e-109 397.1 225 83.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 8.9e-109 397.1 237 80.6
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.2e-108 396.7 222 85.1
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.0e-108 396.0 225 84.0
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.6e-108 395.6 225 83.1
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 82.6
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.6e-108 395.6 221 84.2
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 83.0
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.6e-108 395.6 225 83.1
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.4e-108 395.2 224 82.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 4.4e-108 394.8 230 82.6
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 4.4e-108 394.8 225 83.6
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 7.5e-108 394.0 210 88.6
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 214 86.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.9e-107 392.1 225 82.2
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 3.7e-107 391.7 225 82.2
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 3.7e-107 391.7 225 82.7
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.1e-106 390.2 221 83.3
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 225 81.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.4e-106 389.0 221 80.1
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 4.1e-106 388.3 221 81.9
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 5.4e-106 387.9 225 81.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 5.4e-106 387.9 225 81.8
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 5.4e-106 387.9 223 81.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 7.0e-106 387.5 221 82.4
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 9.2e-106 387.1 251 74.1
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.2e-106 387.1 279 69.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.0e-105 386.0 215 85.6
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.7e-105 385.6 225 80.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 2.3e-104 382.5 225 80.9
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 2.3e-104 382.5 225 80.9
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.3e-104 382.5 221 81.4
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.9e-104 381.7 225 80.4
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.9e-104 381.7 221 80.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 8.6e-104 380.6 246 75.2
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.5e-103 379.8 224 79.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 4.3e-103 378.3 219 81.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.1e-102 375.9 218 80.7
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.4e-101 373.2 218 80.3
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 8.9e-101 370.5 216 79.2
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.1e-98 363.6 216 77.3
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-98 362.8 210 81.9
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.3e-95 350.9 221 70.1
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.9e-93 344.0 228 71.1
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.0e-88 330.5 221 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.7e-88 329.7 221 67.9
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 3.8e-83 312.0 216 64.4
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 8.4e-83 310.8 224 64.3
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.3e-80 303.5 164 87.2
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.5e-79 300.1 163 86.5
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.6e-78 295.4 153 87.6
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.9e-75 285.0 160 80.6
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.1e-74 283.9 167 77.8
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 7.3e-71 271.2 132 94.7
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 6.2e-70 268.1 215 57.7
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-64 250.4 163 73.6
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 2.8e-62 242.7 217 53.9
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 9.3e-58 227.6 213 54.0
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.3e-56 223.0 116 87.1
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-55 220.7 130 79.2
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.1e-54 216.5 114 85.1
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.2e-52 210.7 212 47.6
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.5e-52 210.3 148 73.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.7e-51 206.8 111 88.3
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.2e-41 174.1 130 57.7
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 3.1e-37 159.5 102 77.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.3e-35 154.1 86 79.1
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 5.0e-35 152.1 220 38.2
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 5.7e-31 138.7 98 73.5
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-29 134.4 75 85.3
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.1e-29 132.9 134 51.5
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.5e-28 129.0 78 85.9
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 2.2e-27 126.7 61 96.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.9e-27 126.3 66 84.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 6.1e-25 118.6 108 53.7
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.8e-21 107.1 62 83.9
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.1e-21 106.3 61 83.6
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-20 104.4 57 77.2
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-20 104.0 70 78.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.3e-19 100.9 62 80.6
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-19 100.9 54 83.3
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.2e-18 96.3 64 73.4
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-16 90.1 128 45.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 8.8e-16 88.2 100 49.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 2.0e-15 87.0 54 83.3
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 6.5e-11 72.0 50 70.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 7.2e-10 68.6 39 79.5
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.0e-07 60.5 37 83.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 7.5e-07 58.5 35 77.1


User provided reference genes

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