Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019586 Lotus japonicus HOM05D004313 ORTHO05D005036 9.3e-57 223.4 120 100.0
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 1.3e-13 80.1 51 76.5
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 1.3e-13 80.1 51 76.5
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 1.3e-13 80.1 51 76.5
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 1.3e-13 80.1 51 76.5
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 2.8e-13 79.0 51 74.5
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 2.8e-13 79.0 51 74.5
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 2.8e-13 79.0 51 74.5
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 3.7e-13 78.6 51 74.5
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 4.8e-13 78.2 51 74.5
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 4.8e-13 78.2 51 74.5
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 4.8e-13 78.2 52 73.1
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 6.3e-13 77.8 51 74.5
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 8.3e-13 77.4 65 63.1
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 1.1e-12 77.0 51 74.5
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 1.1e-12 77.0 51 74.5
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 3.1e-12 75.5 63 63.5
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 4.1e-12 75.1 51 70.6
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 4.1e-12 75.1 51 70.6
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 4.1e-12 75.1 51 70.6
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 4.1e-12 75.1 52 71.2
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 4.1e-12 75.1 52 71.2
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 5.4e-12 74.7 51 72.5
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 5.4e-12 74.7 59 67.8
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 7.0e-12 74.3 52 69.2
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 7.0e-12 74.3 54 68.5
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.0e-12 74.3 54 68.5
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.0e-12 74.3 54 68.5
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 9.1e-12 73.9 52 69.2
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 1.2e-11 73.6 51 70.6
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.2e-11 73.6 51 70.6
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 1.2e-11 73.6 63 61.9
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 1.2e-11 73.6 51 70.6
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 1.2e-11 73.6 54 64.8
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 1.2e-11 73.6 51 70.6
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 1.2e-11 73.6 51 70.6
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 1.2e-11 73.6 51 68.6
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 2.0e-11 72.8 63 61.9
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 68.6
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 2.7e-11 72.4 54 66.7
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 68.6
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 70.6
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 70.6
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 70.6
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 70.6
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 70.6
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 2.7e-11 72.4 51 68.6
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 3.5e-11 72.0 53 67.9
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 4.5e-11 71.6 52 67.3
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 4.5e-11 71.6 52 67.3
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 4.5e-11 71.6 52 67.3
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 4.5e-11 71.6 51 68.6
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 4.5e-11 71.6 59 64.4
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 4.5e-11 71.6 59 64.4
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 4.5e-11 71.6 52 67.3
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 70.6
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 5.9e-11 71.2 57 66.7
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 68.6
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 68.6
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 68.6
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 68.6
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 70.6
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 5.9e-11 71.2 51 70.6
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 7.7e-11 70.9 51 68.6
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 1.0e-10 70.5 51 68.6
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.0e-10 70.5 51 68.6
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 1.0e-10 70.5 51 68.6
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 1.0e-10 70.5 51 68.6
Cpa.g.sc203.11 Carica papaya HOM05D004313 ORTHO05D005036 1.3e-10 70.1 52 67.3
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 1.3e-10 70.1 51 66.7
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 1.3e-10 70.1 51 66.7
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 1.7e-10 69.7 52 65.4
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 2.3e-10 69.3 51 66.7
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 2.3e-10 69.3 51 66.7
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 6.6e-10 67.8 51 66.7
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 6.6e-10 67.8 51 66.7
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 6.6e-10 67.8 51 66.7
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 8.6e-10 67.4 50 68.0
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 1.5e-09 66.6 52 63.5
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.9e-09 66.2 52 65.4
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 2.5e-09 65.9 51 64.7
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 2.5e-09 65.9 52 65.4
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 2.5e-09 65.9 50 66.0
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 4.2e-09 65.1 67 53.7
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 4.2e-09 65.1 50 66.0
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 4.2e-09 65.1 50 66.0
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 4.2e-09 65.1 52 63.5
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 4.2e-09 65.1 50 66.0
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 4.2e-09 65.1 50 60.0
CSS0031941 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 5.5e-09 64.7 60 60.0
CSS0034141 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 5.5e-09 64.7 60 60.0
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 7.2e-09 64.3 48 66.7
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.2e-08 63.5 54 64.8
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 1.2e-08 63.5 47 68.1
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 1.2e-08 63.5 60 56.7
CSS0027294 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.8e-08 62.4 59 59.3
CSS0048510 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.8e-08 62.4 59 59.3
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 2.8e-08 62.4 49 63.3
CSS0046447 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 4.7e-08 61.6 48 64.6
CSS0008025 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 6.1e-08 61.2 59 57.6
CSS0021086 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.4e-07 60.1 47 66.0
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 6.8e-07 57.8 47 63.8
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 6.8e-07 57.8 47 63.8
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 6.8e-07 57.8 47 63.8
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 8.9e-07 57.4 50 58.0
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 1.5e-06 56.6 58 55.2
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 2.0e-06 56.2 48 60.4
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 2.0e-06 56.2 47 61.7
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 2.0e-06 56.2 47 61.7
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 2.6e-06 55.8 59 52.5
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 4.4e-06 55.1 46 63.0


User provided reference genes

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