Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 0.0e+00 1546.9 839 100.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 0.0e+00 1297.7 839 83.2
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1273.1 828 81.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 0.0e+00 1260.4 831 80.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 0.0e+00 1260.0 825 80.5
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 0.0e+00 1257.7 835 81.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1256.9 834 80.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 0.0e+00 1253.4 828 81.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1242.6 839 79.5
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1242.3 839 79.3
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 0.0e+00 1242.3 841 78.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 0.0e+00 1236.1 836 78.9
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 0.0e+00 1233.4 821 80.5
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 0.0e+00 1192.2 838 78.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.4e-307 1058.1 832 69.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.3e-306 1056.2 839 69.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 8.5e-306 1053.5 840 69.0
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 3.0e-303 1045.0 840 69.4
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.8e-298 1028.1 837 68.5
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 4.1e-292 1008.1 828 66.1
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 3.5e-291 1005.0 844 66.4
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.3e-290 1003.0 845 67.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.8e-290 1001.5 842 66.2
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.5e-290 1000.7 831 67.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.1e-289 1000.0 838 65.9
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.2e-289 998.0 831 66.5
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 7.2e-289 997.3 834 65.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.1e-288 994.2 834 66.4
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.2e-286 989.9 834 64.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.5e-286 989.6 835 66.0
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.5e-286 989.6 839 65.3
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.7e-285 986.1 837 64.4
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.7e-285 984.9 835 65.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 7.0e-284 980.7 841 63.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 9.1e-284 980.3 836 64.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.5e-283 978.4 827 64.4
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.3e-282 976.5 857 64.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.2e-280 969.9 837 63.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 8.8e-279 963.8 835 63.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.6e-278 962.2 833 63.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.4e-278 961.8 830 63.1
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.8e-277 958.7 831 63.3
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.8e-277 958.7 831 63.5
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.4e-276 955.7 827 63.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.7e-275 952.2 831 63.4
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 5.9e-275 951.0 835 63.7
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 3.8e-274 948.3 835 63.1
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 6.1e-272 941.0 844 61.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 4.0e-271 938.3 836 63.8
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 4.0e-271 938.3 836 61.8
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 5.2e-271 937.9 836 62.4
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-269 933.3 837 62.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 7.0e-268 927.5 841 62.5
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.7e-267 925.6 836 60.3
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.3e-265 918.3 838 61.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.0e-263 913.7 835 62.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.0e-263 913.7 830 60.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.2e-260 902.1 840 59.5
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 4.1e-260 901.7 834 60.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.0e-259 899.4 836 59.8
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.7e-259 899.0 838 61.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 5.0e-258 894.8 826 61.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.6e-256 889.8 838 60.6
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.1e-256 889.4 829 59.8
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.8e-256 889.0 838 61.5
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.0e-256 887.5 863 59.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.1e-255 887.1 835 61.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 8.9e-255 884.0 930 55.1
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-251 872.8 840 57.1
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.7e-248 861.7 835 58.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.4e-244 848.2 549 80.7
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 7.8e-243 844.3 782 62.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 3.3e-241 839.0 875 55.5
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.8e-240 835.9 827 59.3
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 4.7e-240 835.1 833 55.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.4e-239 832.8 845 57.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.4e-238 828.9 809 56.5
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.6e-238 827.8 834 58.0
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 9.9e-238 827.4 838 55.6
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.4e-237 824.3 835 59.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.2e-236 822.4 830 57.6
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.0e-234 817.4 833 55.2
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.0e-234 817.4 835 56.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.0e-234 817.4 835 56.8
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-234 817.0 834 56.2
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-234 817.0 834 56.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.3e-234 816.2 816 56.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 5.2e-231 805.1 840 54.3
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.6e-230 802.7 833 54.1
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 6.4e-229 798.1 838 56.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.4e-228 797.0 842 55.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 8.7e-226 787.7 858 53.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 4.0e-223 778.9 856 52.8
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.7e-221 773.5 854 53.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.7e-216 755.7 837 52.8
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 8.7e-210 734.6 686 59.5
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.5e-209 733.8 806 52.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 8.2e-208 728.0 679 58.9
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.4e-204 717.2 842 50.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 7.4e-193 678.3 848 47.6
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.8e-191 673.7 613 59.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.1e-179 632.1 601 60.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.1e-175 621.3 603 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 4.0e-154 549.7 874 42.6
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 7.8e-142 508.8 451 60.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-138 497.3 485 60.2
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.4e-137 493.0 884 38.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.4e-135 486.1 834 41.5
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.1e-131 474.2 829 41.0
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-125 455.3 384 64.6
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 3.6e-123 446.8 380 65.3
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.9e-120 437.2 449 60.4
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.1e-119 432.6 429 57.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.4e-111 407.5 311 67.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 6.2e-99 366.3 910 30.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.3e-92 343.6 292 62.0
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-91 342.0 448 47.3
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-88 332.0 295 68.1
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.5e-86 323.9 329 57.8
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 6.9e-82 309.7 239 68.2
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 4.5e-81 307.0 234 67.9
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.2e-79 300.8 337 50.7
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.5e-76 292.0 226 66.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 5.3e-74 283.5 200 69.5
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-68 265.4 181 78.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.5e-63 246.9 265 57.7
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-56 225.7 195 63.1
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.6e-54 218.8 951 26.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.0e-53 216.1 158 67.7
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 7.5e-52 209.9 216 54.2
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.5e-41 174.5 142 64.8
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 6.6e-40 170.2 169 59.2
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.0e-37 161.4 213 46.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.4e-36 157.5 162 51.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-35 155.6 157 54.1
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.8e-35 154.8 104 75.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.6e-32 143.3 110 65.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 8.9e-29 133.3 565 27.4
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.4e-28 131.3 273 37.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.2e-27 128.6 710 24.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.7e-27 127.9 516 24.0
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.9e-27 127.5 275 36.7
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-26 125.6 282 36.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 6.0e-25 120.6 71 73.2
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.0e-24 119.8 184 38.6
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.1e-21 108.2 118 52.5
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-18 99.8 111 52.3
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.4e-18 97.4 76 65.8
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.2e-17 96.3 175 43.4
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-17 96.3 65 70.8
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 3.5e-17 94.7 195 44.6
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 4.6e-17 94.4 198 44.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 8.6e-16 90.1 93 58.1
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 5.2e-13 80.9 89 58.4
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.4e-12 78.2 54 72.2
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-11 76.3 120 41.7
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.4e-11 73.9 49 71.4
arahy.Tifrunner.gnm1.ann1.3YA0AF Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-09 69.7 52 67.3
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.5e-09 68.2 65 53.8
arahy.Tifrunner.gnm1.ann1.K8XNS5 Arachis hypogaea HOM05D004092 ORTHO05D005448 1.1e-07 63.2 79 50.6
arahy.Tifrunner.gnm1.ann1.TP987Q Arachis hypogaea HOM05D004092 ORTHO05D016651 9.6e-07 60.1 69 52.2
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.2e-06 59.7 51 56.9
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.1e-06 58.9 79 46.8
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 2.8e-06 58.5 51 56.9
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.6e-06 58.2 101 32.7


User provided reference genes

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