Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 5.3e-56 220.7 106 100.0
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 3.1e-48 194.9 106 87.7
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 1.0e-46 189.9 106 83.0
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 2.5e-45 185.3 107 81.3
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.2e-44 183.0 106 81.1
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 2.3e-43 178.7 106 80.2
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 8.8e-43 176.8 106 77.4
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 2.6e-42 175.3 107 78.5
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 5.7e-42 174.1 106 75.5
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 3.4e-34 148.3 103 67.0
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 5.7e-34 147.5 103 73.8
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.7e-33 146.0 108 64.8
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 4.9e-33 144.4 81 82.7
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 3.2e-32 141.7 111 63.1
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 5.4e-32 141.0 103 64.1
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.5e-31 138.3 108 63.0
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.6e-31 137.9 108 63.0
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 5.9e-31 137.5 108 64.8
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.0e-30 136.7 108 63.0
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 2.3e-30 135.6 103 63.1
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 3.0e-30 135.2 115 60.0
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 3.9e-30 134.8 106 64.2
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.0e-30 134.4 113 61.1
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 1.6e-28 129.4 111 60.4
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 2.1e-28 129.0 103 65.0
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 3.6e-28 128.3 113 55.8
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 4.7e-28 127.9 109 61.5
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 4.7e-28 127.9 108 63.9
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 8.0e-28 127.1 111 60.4
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 8.0e-28 127.1 112 55.4
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 8.0e-28 127.1 101 62.4
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 1.4e-27 126.3 111 60.4
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.8e-27 125.9 114 57.9
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 2.3e-27 125.6 72 79.2
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 3.1e-27 125.2 114 59.6
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 8.9e-27 123.6 109 56.0
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 8.9e-27 123.6 107 64.5
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 8.9e-27 123.6 107 64.5
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 1.5e-26 122.9 113 61.9
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 1.5e-26 122.9 101 55.4
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 2.0e-26 122.5 112 62.5
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.0e-26 122.5 110 57.3
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.0e-26 122.5 110 57.3
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 2.6e-26 122.1 103 64.1
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 2.6e-26 122.1 115 56.5
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.6e-26 122.1 101 55.4
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.4e-26 121.7 107 63.6
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 4.4e-26 121.3 110 57.3
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 5.8e-26 120.9 110 58.2
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 5.8e-26 120.9 110 56.4
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 5.8e-26 120.9 110 58.2
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 5.8e-26 120.9 59 86.4
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 5.8e-26 120.9 53 96.2
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 5.8e-26 120.9 57 87.7
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 7.5e-26 120.6 101 59.4
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 9.8e-26 120.2 110 58.2
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 9.8e-26 120.2 76 71.1
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 1.7e-25 119.4 76 71.1
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 2.2e-25 119.0 114 57.9
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 2.2e-25 119.0 98 62.2
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 2.2e-25 119.0 95 57.9
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 2.9e-25 118.6 75 69.3
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 6.4e-25 117.5 112 57.1
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.1e-24 116.7 104 55.8
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.4e-24 116.3 114 54.4
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 2.4e-24 115.5 106 57.5
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 2.4e-24 115.5 53 92.5
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 2.4e-24 115.5 113 54.9
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 3.2e-24 115.2 54 88.9
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 4.1e-24 114.8 53 88.7
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 5.4e-24 114.4 54 90.7
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 7.0e-24 114.0 66 72.7
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 7.0e-24 114.0 52 92.3
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 1.2e-23 113.2 106 54.7
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 1.6e-23 112.8 105 59.0
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.6e-23 112.8 75 68.0
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 2.7e-23 112.1 59 81.4
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 2.7e-23 112.1 98 57.1
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 4.6e-23 111.3 51 92.2
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 4.6e-23 111.3 51 92.2
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 4.6e-23 111.3 51 92.2
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 4.6e-23 111.3 51 92.2
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 4.6e-23 111.3 51 92.2
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 4.6e-23 111.3 98 57.1
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 4.6e-23 111.3 115 53.0
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 4.6e-23 111.3 51 92.2
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 1.3e-22 109.8 98 55.1
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 2.3e-22 109.0 108 50.0
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 3.0e-22 108.6 52 84.6
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 3.9e-22 108.2 99 56.6
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 3.9e-22 108.2 98 57.1
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 5.0e-22 107.8 108 54.6
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 5.0e-22 107.8 112 50.0
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 5.0e-22 107.8 76 61.8
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 6.6e-22 107.5 98 55.1
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 6.6e-22 107.5 50 86.0
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 6.6e-22 107.5 50 86.0
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 6.6e-22 107.5 50 86.0
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 4.3e-21 104.8 50 88.0
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 9.5e-21 103.6 51 84.3
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 1.6e-20 102.8 102 51.0
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 2.1e-20 102.4 95 54.7
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 3.6e-20 101.7 107 51.4
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 3.6e-20 101.7 98 55.1
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 1.1e-19 100.1 47 80.9
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 1.8e-19 99.4 99 54.5
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 2.3e-19 99.0 66 60.6
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 4.0e-19 98.2 106 48.1
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 5.2e-19 97.8 63 61.9
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 6.8e-19 97.4 66 59.1
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 4.4e-18 94.7 61 72.1
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 4.9e-17 91.3 97 50.5
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 8.3e-17 90.5 103 42.7
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 4.1e-16 88.2 114 41.2
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 1.2e-15 86.7 53 62.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 1.0e-14 83.6 55 60.0


User provided reference genes

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