Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 1.5e-80 302.8 151 100.0
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 2.3e-44 182.6 150 64.7
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 3.4e-40 168.7 151 59.6
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 3.8e-39 165.2 152 61.8
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 7.2e-38 161.0 154 61.7
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 1.6e-37 159.8 149 58.4
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 1.0e-36 157.1 135 60.0
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 1.9e-35 152.9 175 53.7
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 9.7e-35 150.6 154 56.5
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 8.5e-31 137.5 152 51.3
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 3.0e-28 129.0 156 49.4
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 3.3e-27 125.6 156 51.3
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 1.5e-24 116.7 150 46.0
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 2.0e-24 116.3 150 44.7
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 1.1e-22 110.5 156 46.2
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 1.4e-22 110.2 157 45.9
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 4.2e-22 108.6 159 42.8
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 1.2e-21 107.1 150 42.7
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 2.7e-21 105.9 157 45.9
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 4.7e-21 105.1 158 43.0
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 2.3e-20 102.8 138 45.7
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 8.8e-20 100.9 138 41.3
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 1.1e-19 100.5 162 41.4
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 2.0e-19 99.8 152 44.7
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 3.3e-19 99.0 161 42.9
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 1.7e-18 96.7 156 41.0
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 1.7e-18 96.7 101 48.5
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 2.2e-18 96.3 143 44.8
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 3.7e-18 95.5 155 40.6
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 8.2e-18 94.4 116 42.2
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 1.8e-17 93.2 149 39.6
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 3.1e-17 92.4 88 51.1
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 4.1e-17 92.0 153 41.2
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 7.0e-17 91.3 86 53.5
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 7.0e-17 91.3 160 40.0
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 9.1e-17 90.9 138 41.3
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 9.1e-17 90.9 160 40.0
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 1.6e-16 90.1 153 37.3
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 3.5e-16 89.0 90 51.1
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 5.9e-16 88.2 138 40.6
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 7.7e-16 87.8 94 45.7
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.7e-16 87.8 113 44.2
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 1.0e-15 87.4 103 42.7
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.7e-15 86.7 116 44.0
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.1e-14 84.0 138 39.9
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 4.2e-14 82.0 139 38.8
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 9.4e-14 80.9 163 41.1
VMungo1309G0126 Vigna mungo HOM05D007643 ORTHO05D007801 2.1e-13 79.7 113 47.8
VMungo1309G2394 Vigna mungo HOM05D007643 ORTHO05D007801 6.1e-13 78.2 65 60.0
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 3.0e-12 75.9 87 43.7
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 4.0e-12 75.5 87 42.5
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 1.2e-11 73.9 146 34.2
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 2.0e-11 73.2 95 38.9
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 3.3e-11 72.4 128 37.5
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 7.5e-11 71.2 89 44.9
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 1.3e-10 70.5 143 34.3
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 1.7e-10 70.1 130 34.6
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 4.8e-10 68.6 74 45.9
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 4.8e-10 68.6 111 37.8
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 8.2e-10 67.8 128 35.9
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 1.1e-09 67.4 123 35.0
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.1e-09 67.4 147 34.0
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 2.4e-09 66.2 131 35.1
Ah.02g114340 Amaranthus hybridus HOM05D007643 ORTHO05D007801 5.3e-09 65.1 124 38.7
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 1.2e-08 63.9 91 37.4
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 1.2e-08 63.9 92 40.2
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 1.2e-08 63.9 90 38.9
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 1.6e-08 63.5 131 34.4
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 2.0e-08 63.2 148 32.4
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 2.7e-08 62.8 156 34.6
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 3.5e-08 62.4 101 38.6
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 4.5e-08 62.0 135 31.9
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 5.9e-08 61.6 75 42.7
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 5.9e-08 61.6 67 46.3
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 1.0e-07 60.8 100 36.0
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 2.2e-07 59.7 97 34.0
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 2.9e-07 59.3 85 40.0
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 2.9e-07 59.3 76 46.1
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.1e-06 57.4 69 46.4
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 1.1e-06 57.4 67 40.3
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 1.5e-06 57.0 96 35.4
CARHR274520 Cardamine hirsuta HOM05D010173 ORTHO05D007801 1.5e-06 57.0 118 33.9
BcaC06g33198 Brassica carinata HOM05D010173 ORTHO05D007801 3.2e-06 55.8 148 27.7
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 9.4e-06 54.3 64 43.8


User provided reference genes

Program Settings