Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.3e-232 808.5 404 100.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 8.5e-195 683.7 405 87.7
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 4.4e-191 671.4 405 84.9
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 9.1e-189 663.7 409 82.9
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 3.8e-187 658.3 405 82.2
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.9e-186 656.0 405 82.5
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.6e-185 652.9 405 82.2
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 9.7e-183 643.7 402 81.8
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.1e-181 640.2 398 80.9
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 2.4e-181 639.0 405 80.5
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 5.0e-179 631.3 402 80.8
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 7.2e-178 627.5 411 79.1
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-176 623.6 398 79.6
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-176 620.9 398 78.6
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 5.4e-173 611.3 407 75.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 9.1e-173 610.5 347 85.9
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 3.5e-172 608.6 399 76.2
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 4.5e-172 608.2 407 75.7
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 8.6e-171 604.0 398 76.9
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.5e-170 602.4 398 76.9
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.1e-169 599.4 405 76.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 4.7e-169 598.2 398 75.6
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 6.1e-169 597.8 359 81.6
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.0e-168 597.0 397 76.1
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.0e-168 597.0 397 76.1
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.0e-168 597.0 398 76.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 1.4e-168 596.7 359 81.3
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.4e-168 596.7 397 76.1
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.3e-168 595.9 358 82.4
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.8e-168 594.3 402 75.6
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.4e-167 591.7 406 73.9
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.7e-166 589.7 374 77.8
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.7e-166 589.7 374 77.8
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 6.3e-166 587.8 438 70.5
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.1e-165 587.0 359 78.8
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 5.4e-165 584.7 401 74.3
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 9.2e-165 583.9 401 73.6
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.7e-164 582.4 401 74.1
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.7e-164 582.4 424 71.2
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 7.8e-164 580.9 403 73.2
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.9e-163 578.9 399 72.4
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 5.0e-163 578.2 421 69.8
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 6.6e-163 577.8 410 72.4
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.6e-163 577.4 407 73.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.6e-163 577.4 403 73.4
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.9e-162 576.2 406 71.9
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.9e-162 576.2 385 75.1
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 407 72.7
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 3.3e-162 575.5 403 73.2
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 7.3e-162 574.3 401 72.6
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.6e-161 573.2 412 71.8
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.1e-161 572.8 407 71.3
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.8e-161 572.4 349 80.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.6e-161 572.0 405 71.9
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.6e-161 572.0 367 77.9
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 4.7e-161 571.6 363 78.2
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 8.0e-161 570.9 401 73.8
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.0e-160 570.5 402 71.1
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.8e-160 569.7 398 71.4
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.3e-160 569.3 399 71.2
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 8.9e-160 567.4 348 78.2
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.0e-159 566.2 412 69.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 5.7e-159 564.7 401 70.3
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 9.8e-159 563.9 370 73.8
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 9.8e-159 563.9 403 69.0
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-158 563.5 398 73.9
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 2.9e-158 562.4 352 76.7
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.9e-158 562.4 419 68.5
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 407 70.0
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.1e-157 560.5 430 65.8
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 7.0e-157 557.8 411 67.9
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.2e-157 557.4 350 76.3
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.6e-156 556.6 405 71.1
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.0e-156 556.2 344 77.9
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 2.0e-156 556.2 376 73.7
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 4.6e-156 555.1 332 80.4
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 5.9e-156 554.7 362 76.2
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.0e-155 553.9 367 76.0
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 3.9e-155 552.0 400 69.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.5e-154 549.3 349 77.4
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.5e-154 549.3 399 68.4
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.5e-154 549.3 401 72.3
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 3.6e-153 545.4 332 76.8
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.1e-152 543.9 402 67.9
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 3.1e-152 542.3 408 66.9
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 4.0e-152 542.0 350 74.3
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.2e-151 540.4 399 67.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.0e-151 539.7 402 67.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.0e-151 539.7 331 78.2
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-151 538.9 350 74.0
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 5.8e-151 538.1 403 67.0
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 7.5e-151 537.7 353 74.5
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.7e-150 536.6 356 73.0
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.7e-150 536.6 336 77.1
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.7e-150 536.6 403 67.0
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.9e-150 535.8 404 67.6
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 3.7e-150 535.4 336 77.4
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 6.4e-150 534.6 391 69.6
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.4e-149 533.5 404 66.8
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.4e-149 533.5 331 77.6
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 4.1e-149 531.9 352 73.3
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.4e-149 531.6 404 69.1
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.4e-149 531.6 404 69.1
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.6e-148 530.0 298 85.9
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-147 526.6 325 80.3
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.3e-147 526.2 404 68.6
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 3.0e-147 525.8 358 73.5
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.1e-146 523.9 351 72.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.2e-143 513.8 367 69.5
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.5e-143 513.5 386 66.6
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 9.2e-141 504.2 279 87.1
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.7e-140 502.7 283 83.7
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 3.9e-139 498.8 334 72.8
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 3.3e-138 495.7 404 63.9
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.6e-137 493.4 376 66.2
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 8.1e-137 491.1 298 77.5
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 4.4e-135 485.3 362 65.2
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 9.9e-135 484.2 310 74.5
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 9.9e-135 484.2 310 74.5
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 8.4e-134 481.1 335 69.3
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.4e-133 479.6 348 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 5.4e-133 478.4 329 68.1
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-130 469.5 402 61.9
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.4e-127 459.1 327 71.6
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 3.9e-123 445.7 438 57.5
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 8.7e-123 444.5 334 62.9
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 6.2e-121 438.3 337 65.6
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.5e-114 416.4 339 62.5
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.4e-109 399.8 352 56.5
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 4.3e-106 389.0 263 72.2
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 9.6e-106 387.9 325 64.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.3e-102 377.5 377 53.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.7e-102 377.1 301 59.8
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.8e-97 359.0 333 58.6
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-94 349.0 400 52.2
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.6e-84 316.2 188 79.3
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.4e-83 314.3 205 77.1
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.6e-82 310.1 260 63.8
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.0e-75 288.1 364 48.6
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 2.8e-73 280.0 287 53.7
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.1e-72 278.1 157 85.4
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.7e-63 246.9 142 78.2
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.7e-60 236.9 309 44.7
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-59 233.4 236 55.9
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-58 230.3 260 54.2
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-54 216.1 324 45.1
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-52 210.3 181 63.5
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-50 203.4 132 78.8
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.3e-49 201.4 116 84.5
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-49 199.1 181 61.9
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-49 199.1 181 61.9
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-41 173.7 122 75.4
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-32 143.3 159 54.1
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-32 143.3 159 54.1
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.9e-29 134.4 231 39.4
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 3.9e-22 110.2 172 39.0
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 2.2e-17 94.4 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 2.2e-17 94.4 53 75.5
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 1.5e-13 81.6 102 51.0
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-12 77.8 51 76.5
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 1.3e-09 68.6 44 79.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-09 68.6 39 87.2
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 1.9e-08 64.7 56 64.3
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 1.9e-08 64.7 56 64.3
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 7.8e-07 59.3 47 59.6


User provided reference genes

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