Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018974 Lotus japonicus HOM05D000038 ORTHO05D236583 6.1e-137 490.7 232 100.0
Lj3g0024806 Lotus japonicus HOM05D000038 ORTHO05D000689 5.3e-40 168.7 145 60.7
TPR.G17912 Trifolium pratense HOM05D000038 ORTHO05D000689 1.1e-29 134.4 124 51.6
Ca_23609_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 1.4e-29 134.0 112 57.1
Glyma.16G034900 Glycine max HOM05D000038 ORTHO05D000689 1.3e-27 127.5 112 51.8
Lalb_Chr10g0096821 Lupinus albus HOM05D000038 ORTHO05D000689 4.3e-26 122.5 116 50.9
Phvul.010G100400 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 1.6e-25 120.6 114 49.1
Glyma.07G069000 Glycine max HOM05D000038 ORTHO05D000689 2.2e-25 120.2 113 50.4
Medtr8g030500 Medicago truncatula HOM05D000038 ORTHO05D000689 2.8e-25 119.8 124 49.2
Psat4g156440 Pisum sativum HOM05D000038 ORTHO05D000689 7.6e-23 111.7 112 50.0
Prupe.2G173300 Prunus persica HOM05D000038 ORTHO05D000689 4.2e-21 105.9 111 48.6
MD01G1066300 Malus domestica HOM05D000038 ORTHO05D000689 5.5e-21 105.5 113 46.9
PGR031G2336 Punica granatum HOM05D000038 ORTHO05D000689 1.2e-20 104.4 116 44.0
Eucgr.D02307 Eucalyptus grandis HOM05D000038 ORTHO05D000689 4.6e-20 102.4 115 43.5
arahy.Tifrunner.gnm1.ann1.862N53 Arachis hypogaea HOM05D000038 ORTHO05D000689 1.0e-19 101.3 112 48.2
RcHm_v2.0_Chr1g0356701 Rosa chinensis HOM05D000048 ORTHO05D000689 3.9e-19 99.4 116 44.8
Solyc01g094830.4 Solanum lycopersicum HOM05D000038 ORTHO05D000689 8.8e-19 98.2 116 43.1
Actinidia18416 Actinidia chinensis HOM05D000038 ORTHO05D000689 1.1e-18 97.8 117 42.7
Duzib133G0732 Durio zibethinus HOM05D000038 ORTHO05D000689 1.5e-18 97.4 116 42.2
Sc26g0000850 Simmondsia chinensis HOM05D000038 ORTHO05D000689 1.9e-18 97.1 115 42.6
vmacro20918 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 2.5e-18 96.7 120 40.0
Cpa.g.sc11.27 Carica papaya HOM05D000038 ORTHO05D000689 3.3e-18 96.3 116 44.0
Lj9A585G54 Lonicera japonica HOM05D000013 ORTHO05D000689 5.7e-18 95.5 145 38.6
Sopen01g038610 Solanum pennellii HOM05D000038 ORTHO05D000689 7.4e-18 95.1 116 42.2
CiPaw.02G032700 Carya illinoinensis HOM05D000038 ORTHO05D000689 1.3e-17 94.4 118 44.9
Rhsim01G0148100 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.3e-17 94.4 113 39.8
Cc02_g38260 Coffea canephora HOM05D000038 ORTHO05D000689 1.7e-17 94.0 116 40.5
Duzib138G0561 Durio zibethinus HOM05D000038 ORTHO05D000689 1.7e-17 94.0 116 39.7
CAN.G78.97 Capsicum annuum HOM05D000038 ORTHO05D000689 2.8e-17 93.2 116 41.4
PGSC0003DMG400000179 Solanum tuberosum HOM05D000038 ORTHO05D000689 3.7e-17 92.8 116 41.4
Nitab4.5_0010258g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 4.8e-17 92.4 116 40.5
FAN03G0713 Fragaria x ananassa HOM05D000048 ORTHO05D000445 6.3e-17 92.0 112 43.8
FAN10G0958 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.4e-16 90.9 112 43.8
FAN10G3597 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.4e-16 90.9 112 43.8
Thecc.01G356800 Theobroma cacao HOM05D000038 ORTHO05D000689 1.4e-16 90.9 116 40.5
Dinv32498 Davidia involucrata HOM05D000013 ORTHO05D000689 1.8e-16 90.5 116 41.4
Nitab4.5_0000583g0260 Nicotiana tabacum HOM05D000038 ORTHO05D000689 1.8e-16 90.5 124 38.7
Actinidia02832 Actinidia chinensis HOM05D000038 ORTHO05D000689 2.4e-16 90.1 117 38.5
DCAR_025200 Daucus carota HOM05D000038 ORTHO05D000689 3.1e-16 89.7 117 36.8
Ah.05g180430 Amaranthus hybridus HOM05D000038 ORTHO05D000689 4.1e-16 89.4 116 42.2
TAR375G0960 Trochodendron aralioides HOM05D000013 ORTHO05D000689 4.1e-16 89.4 117 40.2
FAN01G0299 Fragaria x ananassa HOM05D000038 ORTHO05D000689 5.3e-16 89.0 112 42.9
MSTRG.20846 Avicennia marina HOM05D000038 ORTHO05D000689 9.1e-16 88.2 116 38.8
Potri.014G086900 Populus trichocarpa HOM05D000038 ORTHO05D000689 1.2e-15 87.8 116 39.7
Atru.chr5.522 Acer truncatum HOM05D000038 ORTHO05D000689 1.5e-15 87.4 116 39.7
FvH4_7g14760 Fragaria vesca HOM05D000038 ORTHO05D000689 1.5e-15 87.4 114 41.2
FAN06G0203 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.5e-15 87.4 114 41.2
FAN06G2954 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.5e-15 87.4 114 41.2
Sabra14G0063000 Salix brachista HOM05D000038 ORTHO05D000689 1.5e-15 87.4 116 39.7
COL.COLO4_12733 Corchorus olitorius HOM05D000048 ORTHO05D000689 2.0e-15 87.0 116 38.8
Nn6g33347 Nelumbo nucifera HOM05D000013 ORTHO05D000689 2.0e-15 87.0 116 38.8
CANSAT56G1389 Cannabis sativa HOM05D000038 ORTHO05D000689 7.7e-15 85.1 115 40.0
Peaxi162Scf00020g00914 Petunia axillaris HOM05D000048 ORTHO05D000445 1.3e-14 84.3 116 39.7
Aa31LG5G610 Aethionema arabicum HOM05D000038 ORTHO05D000689 2.9e-14 83.2 116 36.2
Dinv43839 Davidia involucrata HOM05D000013 ORTHO05D000689 5.0e-14 82.4 109 39.4
Migut.B01774 Erythranthe guttata HOM05D000048 ORTHO05D000445 5.0e-14 82.4 118 37.3
Gohir.1Z049341 Gossypium hirsutum HOM05D000038 ORTHO05D000689 5.0e-14 82.4 117 38.5
Gohir.A12G108200 Gossypium hirsutum HOM05D000038 ORTHO05D000689 5.0e-14 82.4 117 38.5
Gohir.D12G111400 Gossypium hirsutum HOM05D000038 ORTHO05D000689 6.5e-14 82.0 117 37.6
Gorai.008G120700 Gossypium raimondii HOM05D000038 ORTHO05D000689 6.5e-14 82.0 117 37.6
THA.LOC104825848 Tarenaya hassleriana HOM05D000038 ORTHO05D000689 1.9e-13 80.5 124 39.5
TAR374G1693 Trochodendron aralioides HOM05D000038 ORTHO05D000689 1.9e-13 80.5 116 35.3
Haze_15531 Corylus avellana HOM05D000038 ORTHO05D000689 3.2e-13 79.7 120 40.8
Lsat_1_v5_gn_7_4140 Lactuca sativa HOM05D000038 ORTHO05D000689 3.2e-13 79.7 117 35.0
AUR62004384 Chenopodium quinoa HOM05D000048 ORTHO05D000445 5.5e-13 79.0 114 43.0
Cfa003901 Carpinus fangiana HOM05D000048 ORTHO05D000445 1.2e-12 77.8 120 40.0
Carub.0006s3690 Capsella rubella HOM05D000038 ORTHO05D000689 1.6e-12 77.4 116 34.5
AL6G53140 Arabidopsis lyrata HOM05D000038 ORTHO05D000689 2.1e-12 77.0 116 35.3
AT4G00340 Arabidopsis thaliana HOM05D000038 ORTHO05D000689 2.7e-12 76.6 116 35.3
HanXRQChr04g0121241 Helianthus annuus HOM05D000038 ORTHO05D000689 2.7e-12 76.6 113 36.3
TWI14G1091 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 3.6e-12 76.3 116 34.5
Aqoxy5G04027 Aquilegia oxysepala HOM05D000013 ORTHO05D000689 7.9e-12 75.1 115 33.0
Manes.05G032500 Manihot esculenta HOM05D000038 ORTHO05D000689 1.4e-11 74.3 118 36.4
SGA_v2.0_scaffold4G02293 Striga asiatica HOM05D000038 ORTHO05D000689 3.9e-11 72.8 114 35.1
SGA_v2.0_scaffold95G28827 Striga asiatica HOM05D000038 ORTHO05D000689 3.9e-11 72.8 117 33.3
Sp6g00410 Schrenkiella parvula HOM05D000038 ORTHO05D000689 8.8e-11 71.6 116 36.2
QL04p054057 Quercus lobata HOM05D000048 ORTHO05D000445 1.1e-10 71.2 116 39.7
BcaB01g02242 Brassica carinata HOM05D000038 ORTHO05D000689 5.7e-10 68.9 120 35.0
Thhalv10028429m.g Eutrema salsugineum HOM05D000038 ORTHO05D000689 7.4e-10 68.6 116 31.9
A09p00560 Brassica napus HOM05D000038 ORTHO05D000689 2.2e-09 67.0 115 33.9
BraA09t35704Z Brassica rapa HOM05D000038 ORTHO05D000689 2.2e-09 67.0 115 33.9
MBI18_g33153_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000689 2.8e-09 66.6 119 37.0
ATR0680G354 Amborella trichopoda HOM05D000038 ORTHO05D000689 4.1e-08 62.8 113 34.5
VMungo0331G0144 Vigna mungo HOM05D000071 ORTHO05D037843 1.5e-07 60.8 57 43.9
CARHR248430 Cardamine hirsuta HOM05D000038 ORTHO05D000689 2.6e-07 60.1 116 31.0
VMungo0647G1022 Vigna mungo HOM05D000071 ORTHO05D037843 4.5e-07 59.3 35 62.9
VMungo0464G1893 Vigna mungo HOM05D000071 ORTHO05D037843 7.7e-07 58.5 42 54.8
BcaC04g24181 Brassica carinata HOM05D000038 ORTHO05D000689 1.0e-06 58.2 122 32.0
C09p00300 Brassica napus HOM05D000038 ORTHO05D000689 1.0e-06 58.2 122 32.0
BolC9t52965H Brassica oleracea HOM05D000038 ORTHO05D000689 1.0e-06 58.2 122 32.0
SalBow8G1647 Salvia bowleyana HOM05D000013 ORTHO05D000011 2.9e-06 56.6 48 45.8
TPR.G15379 Trifolium pratense HOM05D000013 ORTHO05D000011 3.8e-06 56.2 58 43.1
ECA236G1436 Erigeron canadensis HOM05D000038 ORTHO05D000689 8.5e-06 55.1 117 30.8
SalBow8G1774 Salvia bowleyana HOM05D000013 ORTHO05D000011 8.5e-06 55.1 58 41.4


User provided reference genes

Program Settings