Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 6.5e-307 1056.6 544 100.0
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.1e-211 738.0 549 70.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.2e-207 726.9 552 69.9
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.8e-203 713.0 534 70.0
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.2e-201 704.1 559 67.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.4e-200 703.4 485 74.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 5.9e-199 698.0 486 73.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 2.9e-198 695.7 563 65.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 2.9e-198 695.7 452 77.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 4.8e-193 678.3 510 68.6
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 7.4e-186 654.4 560 63.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 9.1e-184 647.5 562 64.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.0e-178 629.8 558 61.8
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.0e-174 617.5 550 61.3
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.5e-173 613.6 554 60.5
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.0e-171 607.4 553 59.3
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.3e-171 606.3 555 59.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 2.3e-171 606.3 557 60.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.0e-171 605.9 530 62.3
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.7e-171 604.7 555 59.6
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 4.4e-170 602.1 554 59.6
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 5.0e-166 588.6 514 61.7
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 8.5e-166 587.8 546 58.4
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.2e-164 583.9 505 62.0
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.2e-164 583.9 556 58.6
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 4.7e-164 582.0 554 57.8
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 8.0e-164 581.3 546 59.3
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.4e-163 580.5 550 57.5
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.3e-163 579.7 538 58.0
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 4.0e-163 578.9 575 55.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.8e-163 578.2 566 57.2
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.5e-162 577.0 537 58.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 4.4e-162 575.5 556 57.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 3.7e-161 572.4 546 59.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.7e-161 572.4 555 57.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.7e-161 572.4 557 56.2
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.7e-161 572.4 551 58.4
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.1e-160 570.9 546 58.2
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 7.0e-160 568.2 546 57.5
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 7.0e-160 568.2 563 56.5
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 7.7e-159 564.7 539 57.9
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 7.7e-159 564.7 559 56.0
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.3e-158 563.1 541 56.4
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.3e-158 563.1 543 58.9
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.0e-158 562.0 543 57.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 4.2e-157 558.9 552 54.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.8e-156 556.2 541 56.4
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.0e-155 554.3 552 58.0
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.0e-155 554.3 556 56.8
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.4e-155 553.9 541 55.8
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.3e-155 553.1 556 56.7
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.0e-155 552.7 556 54.9
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.5e-154 550.4 551 54.4
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.5e-154 550.4 537 55.5
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.7e-153 545.8 547 58.3
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.2e-151 540.8 565 56.1
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.7e-151 539.7 569 53.4
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 4.5e-151 538.9 553 54.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 2.3e-150 536.6 517 56.1
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.6e-150 535.0 561 54.4
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.1e-149 534.3 548 54.9
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 7.3e-149 531.6 543 54.9
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.6e-148 530.4 540 53.3
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 8.0e-148 528.1 556 53.1
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.3e-147 526.6 540 53.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.3e-147 526.6 556 54.0
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 3.1e-147 526.2 550 56.0
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 4.0e-147 525.8 556 53.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.2e-147 525.4 552 53.6
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 8.9e-147 524.6 562 53.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 8.9e-147 524.6 561 54.7
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.2e-146 524.2 562 53.2
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.2e-146 524.2 547 54.5
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.6e-146 523.1 564 52.3
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.6e-146 523.1 560 53.9
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 4.4e-146 522.3 563 52.6
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 5.8e-146 521.9 541 53.4
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 9.8e-146 521.2 553 53.0
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.7e-145 520.4 553 52.8
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.9e-145 519.6 535 57.2
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-145 519.2 544 53.1
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 4.9e-145 518.8 558 52.0
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 4.9e-145 518.8 563 52.6
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 8.3e-145 518.1 544 53.5
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.4e-144 516.5 554 53.6
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.4e-144 516.5 479 57.6
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 5.4e-144 515.4 562 52.1
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-143 514.2 564 53.2
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.0e-142 509.6 563 53.5
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 6.6e-142 508.4 560 53.6
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.3e-141 505.0 553 51.0
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.6e-140 503.8 563 52.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.4e-138 496.1 592 49.3
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 4.4e-138 495.7 629 49.0
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.4e-136 490.7 541 51.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.0e-134 483.0 574 49.3
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 6.6e-134 481.9 510 52.5
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 8.6e-134 481.5 559 50.3
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.9e-133 480.3 591 48.7
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.6e-133 478.8 557 47.8
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.1e-131 473.0 483 53.8
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.0e-130 470.3 499 54.5
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 5.8e-130 468.8 491 55.4
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.2e-129 466.8 512 52.1
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 2.4e-128 463.4 562 47.2
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 2.1e-127 460.3 543 49.7
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 7.8e-127 458.4 610 45.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 3.9e-126 456.1 555 48.1
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.4e-123 447.6 565 49.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.8e-123 447.2 467 51.2
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 8.4e-121 438.3 541 47.0
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.2e-119 434.5 516 48.6
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.9e-117 427.2 458 54.6
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 6.2e-116 422.2 560 46.4
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 9.0e-115 418.3 438 53.0
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.8e-108 396.7 551 41.0
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-106 391.3 554 43.5
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.9e-105 386.0 521 41.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.7e-103 380.2 540 42.8
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 1.3e-102 377.9 502 46.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.6e-101 372.5 523 42.1
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.6e-101 372.5 588 39.3
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-99 368.2 589 38.5
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-99 368.2 589 38.5
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.7e-97 360.9 493 44.4
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 8.4e-97 358.6 315 59.7
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.0e-94 350.1 469 46.7
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 6.2e-92 342.4 328 57.3
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.3e-84 318.2 353 51.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 2.4e-83 313.9 537 37.1
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 3.1e-83 313.5 417 44.8
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 9.4e-72 275.4 164 76.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.7e-68 264.6 608 32.9
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-66 257.7 612 32.8
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 7.7e-66 255.8 164 71.3
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.2e-65 254.2 709 29.5
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.4e-59 234.2 475 35.6
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.7e-52 210.3 196 52.6
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 4.1e-51 206.8 404 38.9
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.4e-45 187.2 545 30.6
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.3e-40 170.6 178 57.9
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 2.1e-39 167.9 196 52.0
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.0e-38 164.1 160 56.2
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.2e-36 157.9 135 62.2
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 8.3e-36 156.0 259 42.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 7.3e-32 142.9 148 55.4
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.0e-30 137.1 285 34.4
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.4e-27 127.9 162 45.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.2e-27 127.5 158 47.5
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.3e-25 122.1 94 62.8
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 8.6e-25 119.4 496 26.8
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 7.5e-21 106.3 180 35.6
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.6e-18 98.6 99 52.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.5e-16 91.3 59 69.5
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.3e-09 68.9 174 35.6
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.2e-07 62.4 38 71.1
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 6.8e-06 56.6 81 43.2


User provided reference genes

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