Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 6.9e-161 570.5 266 100.0
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 9.3e-150 533.5 265 91.7
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.0e-148 530.0 261 91.6
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.3e-148 529.6 261 92.7
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.5e-147 526.2 265 89.4
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.3e-146 523.1 266 91.4
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.3e-146 523.1 266 91.4
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 2.0e-144 515.8 264 89.0
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.4e-140 503.1 259 88.0
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 3.3e-139 498.4 261 87.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.7e-138 496.1 261 85.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 5.3e-137 491.1 264 83.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 8.5e-135 483.8 262 84.0
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.2e-134 481.5 264 82.2
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.2e-133 479.9 266 82.0
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.2e-133 479.9 261 83.1
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.1e-133 479.2 264 82.6
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 2.7e-133 478.8 257 84.4
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 3.0e-132 475.3 264 81.4
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 3.0e-132 475.3 256 84.8
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 5.2e-132 474.6 254 83.5
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 5.2e-132 474.6 253 83.8
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 5.2e-132 474.6 265 82.3
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.3e-131 471.9 266 79.7
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 5.7e-131 471.1 264 81.1
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.7e-130 469.5 261 82.4
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.8e-130 468.8 266 78.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.2e-130 467.2 254 83.1
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 2.4e-129 465.7 263 80.6
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.1e-129 465.3 264 80.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.3e-129 464.5 267 78.7
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.0e-129 464.2 268 79.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 7.0e-129 464.2 264 80.3
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 9.1e-129 463.8 260 79.2
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.6e-128 463.0 263 79.5
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.0e-128 462.6 261 82.0
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.6e-128 462.2 261 79.3
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.5e-128 461.8 261 79.7
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 7.7e-128 460.7 270 79.3
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.3e-127 459.9 253 81.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.3e-127 459.9 261 78.9
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.7e-127 459.5 260 78.5
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.7e-127 459.5 267 80.1
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.7e-127 459.5 263 77.9
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.7e-127 459.5 265 80.0
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 6.5e-127 457.6 263 77.6
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 6.5e-127 457.6 266 79.3
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.5e-126 456.4 265 80.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.5e-126 456.4 258 80.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.2e-125 453.4 247 83.0
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.6e-125 451.8 264 78.0
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.6e-125 451.8 263 79.8
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.7e-125 451.4 252 81.0
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 6.1e-125 451.1 261 80.5
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 8.0e-125 450.7 264 77.3
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 8.0e-125 450.7 265 77.4
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.0e-124 450.3 266 78.2
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.0e-124 450.3 252 80.6
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.4e-124 449.9 265 78.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-124 449.9 257 79.4
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.8e-124 449.5 268 78.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 3.0e-124 448.7 266 77.8
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.0e-124 448.7 252 80.6
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 4.0e-124 448.4 264 79.5
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 6.7e-124 447.6 266 77.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 8.8e-124 447.2 264 79.2
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.8e-124 447.2 257 79.0
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-123 446.8 266 77.8
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.6e-123 445.7 268 77.6
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.3e-123 445.3 264 78.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 4.4e-123 444.9 264 76.5
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 5.7e-123 444.5 267 78.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 5.7e-123 444.5 264 78.8
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 7.5e-123 444.1 264 79.2
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.3e-122 443.4 267 76.0
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.2e-122 442.6 263 76.0
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.2e-122 442.6 267 77.9
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-122 442.2 264 76.5
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 2.8e-122 442.2 256 78.1
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.8e-122 442.2 280 73.9
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.8e-122 441.4 266 76.3
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 6.3e-122 441.0 262 76.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 9.1e-121 437.2 264 76.9
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 9.1e-121 437.2 258 76.7
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 9.1e-121 437.2 270 75.9
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.2e-120 436.8 263 77.2
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.6e-120 436.4 256 78.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 7.7e-120 434.1 253 77.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.9e-119 432.2 266 76.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.2e-118 428.7 283 70.0
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.2e-118 428.7 250 77.6
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-117 426.4 281 70.5
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 3.0e-116 422.2 288 70.5
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.0e-116 421.8 237 80.6
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.0e-116 421.8 250 76.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 6.8e-116 421.0 260 72.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.2e-115 420.2 261 74.3
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 5.7e-115 417.9 269 73.2
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.7e-114 416.4 264 74.6
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.8e-113 412.9 269 71.4
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 3.1e-113 412.1 282 68.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 5.4e-113 411.4 231 77.1
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 9.1e-113 410.6 261 73.9
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 4.5e-112 408.3 267 74.5
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.0e-111 407.1 267 73.4
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.3e-111 406.8 235 77.9
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.9e-111 405.6 296 67.2
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.6e-109 399.8 231 74.0
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 3.0e-108 395.6 229 78.2
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 3.0e-108 395.6 210 84.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 6.8e-108 394.4 193 90.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.0e-107 392.9 265 70.6
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.1e-105 387.1 218 79.4
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.6e-104 383.3 221 80.1
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 4.3e-102 375.2 240 66.2
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.8e-100 369.8 234 68.4
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.2e-100 368.2 266 65.4
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.2e-97 359.0 218 69.3
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.2e-96 357.1 234 65.4
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.2e-96 357.1 217 69.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.3e-95 353.6 284 60.6
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-94 350.5 252 67.5
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.5e-94 349.4 231 71.0
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.7e-90 336.7 330 53.0
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.0e-88 328.2 164 88.4
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 7.8e-88 327.8 286 59.1
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.9e-82 308.5 198 66.7
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 7.1e-81 304.7 162 82.1
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 9.2e-81 304.3 169 81.1
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 6.0e-80 301.6 215 58.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 9.6e-70 267.7 163 76.7
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.5e-67 260.4 151 79.5
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.4e-65 253.1 138 82.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 6.2e-61 238.4 214 57.5
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 6.2e-61 238.4 230 54.8
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-51 206.1 123 74.8
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-51 206.1 122 77.0
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.0e-35 153.7 105 72.4
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 3.3e-30 136.3 82 80.5
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.1e-28 129.8 82 76.8
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 5.0e-26 122.5 72 79.2
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.2e-25 119.4 68 70.6
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 5.5e-25 119.0 91 69.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.8e-23 114.0 66 78.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.1e-23 112.5 65 70.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 5.9e-19 99.0 54 77.8
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 5.0e-18 95.9 61 75.4
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 9.4e-17 91.7 85 57.6
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 8.0e-16 88.6 84 51.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.5e-14 84.3 43 81.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 2.0e-14 84.0 70 64.3
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.4e-12 77.0 56 62.5
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 7.0e-12 75.5 56 64.3
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.0e-11 73.9 56 58.9
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 7.2e-09 65.5 170 30.6
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 8.0e-08 62.0 67 46.3


User provided reference genes

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