Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 1.5e-148 529.6 297 100.0
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 1.4e-98 363.6 306 69.9
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 3.5e-97 359.0 306 71.9
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.0e-96 357.5 306 72.2
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 1.7e-96 356.7 306 72.5
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.9e-95 353.2 307 69.4
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 4.8e-94 348.6 306 71.6
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 6.9e-93 344.7 335 66.0
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 4.2e-90 335.5 307 70.7
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 8.7e-88 327.8 303 67.0
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.1e-87 327.4 304 64.5
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.5e-87 327.0 306 63.1
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.6e-87 325.1 310 62.3
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 7.4e-87 324.7 300 66.7
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 7.4e-87 324.7 300 63.0
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 2.8e-86 322.8 301 64.1
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 3.7e-86 322.4 300 66.0
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 3.7e-86 322.4 302 67.5
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 4.8e-86 322.0 324 60.8
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 6.2e-86 321.6 302 62.9
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 8.1e-86 321.2 302 63.2
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 8.1e-86 321.2 308 62.3
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 1.8e-85 320.1 303 64.7
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.8e-85 320.1 304 62.2
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 2.4e-85 319.7 313 61.3
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 5.3e-85 318.5 302 67.2
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 6.9e-85 318.2 305 64.3
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 9.0e-85 317.8 304 66.8
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 9.0e-85 317.8 302 63.2
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 1.2e-84 317.4 305 63.3
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 2.0e-84 316.6 302 62.9
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 2.6e-84 316.2 302 66.9
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.6e-84 316.2 302 62.9
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 3.4e-84 315.8 304 61.8
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 4.5e-84 315.5 289 61.6
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 7.6e-84 314.7 303 61.4
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 9.9e-84 314.3 306 67.6
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 1.3e-83 313.9 306 64.7
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 1.3e-83 313.9 299 60.5
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.7e-83 313.5 304 62.8
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 2.2e-83 313.2 299 63.2
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 3.8e-83 312.4 295 63.7
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.4e-83 311.2 302 65.9
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 1.4e-82 310.5 304 61.5
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 2.5e-82 309.7 305 60.3
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 3.2e-82 309.3 289 62.6
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 5.5e-82 308.5 300 64.3
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 4.6e-81 305.4 305 60.0
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 2.3e-80 303.1 306 65.4
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 2.3e-80 303.1 302 60.3
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.9e-80 302.4 306 65.0
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 6.7e-80 301.6 307 60.3
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.5e-79 300.4 304 60.2
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.5e-79 300.4 299 63.5
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 4.3e-79 298.9 305 60.0
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 5.6e-79 298.5 300 59.0
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 1.3e-78 297.4 305 59.3
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 2.8e-78 296.2 246 67.1
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 8.2e-78 294.7 297 55.9
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 8.2e-78 294.7 299 63.9
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.1e-77 294.3 293 63.1
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 1.4e-77 293.9 304 63.2
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 1.8e-77 293.5 296 59.8
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 3.1e-77 292.7 297 64.0
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.2e-76 290.8 307 63.5
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 2.0e-76 290.0 306 55.2
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 2.6e-76 289.7 303 58.1
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 3.4e-76 289.3 298 62.8
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 4.5e-76 288.9 299 57.9
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 5.8e-76 288.5 300 58.3
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.0e-75 287.7 304 62.2
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 6.5e-75 285.0 303 62.0
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 1.1e-74 284.3 305 56.7
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 2.5e-74 283.1 300 62.7
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 3.2e-74 282.7 281 62.3
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 4.2e-74 282.3 304 61.5
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 4.2e-74 282.3 300 62.0
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 3.5e-73 279.3 311 58.2
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 1.8e-72 276.9 300 61.7
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 1.8e-72 276.9 287 58.2
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 3.0e-72 276.2 308 61.4
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.9e-72 275.8 304 56.2
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 8.7e-72 274.6 302 55.6
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 1.5e-71 273.9 303 54.5
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 1.5e-71 273.9 289 57.8
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.5e-71 273.9 223 72.2
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.9e-71 273.5 175 77.1
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.9e-71 273.5 299 55.9
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 7.4e-71 271.6 202 70.3
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.3e-70 270.8 304 53.6
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 1.3e-70 270.8 301 57.1
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 2.2e-70 270.0 202 69.8
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 2.2e-70 270.0 202 69.8
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 2.2e-70 270.0 202 69.8
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 2.2e-70 270.0 206 71.4
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 2.8e-70 269.6 296 62.5
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 4.8e-70 268.9 202 69.3
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 4.8e-70 268.9 303 54.5
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 4.8e-70 268.9 296 52.0
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 8.2e-70 268.1 294 56.5
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 1.8e-69 266.9 201 69.7
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 1.8e-69 266.9 201 69.7
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 1.8e-69 266.9 201 69.7
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 2.4e-69 266.5 201 70.1
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 2.4e-69 266.5 303 55.4
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 3.1e-69 266.2 296 51.7
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 5.3e-69 265.4 301 55.8
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 5.3e-69 265.4 301 55.8
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 9.0e-69 264.6 281 57.7
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 9.0e-69 264.6 304 54.3
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 9.0e-69 264.6 201 68.7
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 2.0e-68 263.5 299 56.2
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.3e-67 260.8 303 53.1
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 1.7e-67 260.4 306 52.3
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 2.2e-67 260.0 332 51.8
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 2.2e-67 260.0 297 52.9
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.8e-67 259.2 343 49.3
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 3.8e-67 259.2 298 56.7
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 5.0e-67 258.8 293 59.4
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 8.5e-67 258.1 307 52.1
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 1.4e-66 257.3 303 51.8
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 1.4e-66 257.3 303 57.1
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 1.4e-66 257.3 285 55.8
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 1.6e-65 253.8 302 53.0
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 3.6e-65 252.7 306 52.9
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 6.1e-65 251.9 320 50.0
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 7.9e-65 251.5 300 51.7
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 7.9e-65 251.5 192 75.5
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 1.4e-64 250.8 332 54.8
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.9e-64 249.2 400 44.2
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.1e-63 247.7 199 64.3
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.5e-63 246.5 284 56.3
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 8.2e-62 241.5 305 50.2
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 8.2e-62 241.5 295 50.8
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.1e-61 241.1 298 51.3
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.1e-61 239.6 307 50.8
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 2.6e-60 236.5 306 48.0
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 7.7e-60 235.0 283 52.3
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 5.0e-59 232.3 262 55.3
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 8.5e-59 231.5 284 51.8
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 9.4e-58 228.0 310 47.4
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 1.2e-57 227.6 288 50.7
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.8e-56 223.8 154 72.7
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 3.9e-56 222.6 249 57.8
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 4.4e-55 219.2 288 49.3
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 4.4e-55 219.2 286 53.1
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 8.2e-54 214.9 226 63.7
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.1e-53 214.5 128 80.5
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 5.0e-51 205.7 242 59.1
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 5.5e-50 202.2 272 48.5
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 2.1e-49 200.3 225 49.8
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.4e-48 197.6 299 41.1
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.8e-45 187.2 261 48.3
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 5.3e-45 185.7 206 52.4
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 2.6e-44 183.3 217 47.5
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 1.5e-42 177.6 180 58.3
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 9.4e-42 174.9 194 51.5
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.8e-40 170.6 277 48.4
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.2e-39 167.9 311 39.9
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.1e-37 161.4 180 65.6
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.4e-37 161.0 249 40.2
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 2.0e-36 157.1 215 47.9
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 6.1e-33 145.6 287 45.3
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 3.8e-27 126.3 71 81.7
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 6.6e-27 125.6 71 80.3
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.3e-26 123.2 70 85.7
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 2.6e-23 113.6 188 45.7
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 2.6e-23 113.6 72 80.6
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 8.3e-22 108.6 77 66.2
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 2.4e-21 107.1 77 76.6
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 4.1e-21 106.3 114 57.0
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 9.2e-21 105.1 150 56.0
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 1.7e-19 100.9 77 72.7
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.1e-17 94.0 46 87.0
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 2.3e-16 90.5 207 42.0
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 1.9e-13 80.9 76 63.2
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 4.1e-13 79.7 73 63.0
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 2.3e-11 73.9 130 39.2
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 8.9e-08 62.0 219 33.8


User provided reference genes

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